Detail information of Os03g0321900_circ_g.2


General Information
CircRNA Name Os03g0321900_circ_g.2
ID in PlantcircBase osa_circ_019559
Alias Os_ciR8467
Organism Oryza sativa
Position chr3: 11654882-11655619  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os03g0321900
Parent gene annotation Similar to tRNA-specific adenosine deaminase. (Os03t0321900-01);
CMP/dCMP deaminase, zinc-binding domain containing protein. (Os0
3t0321900-02)
Parent gene strand +
Alternative splicing NA
Support reads 2/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0321900-02:3
Os03t0321900-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAATTCCCGGGCCAAAAGGTTACAAATGTACTGGTGGGATCATGGCGGAGGAGGCAGTGGCTC
TTTTTAGAAATTTCTACGAGCAAGGGAATCCAAATGgctacaaggcatgctgagatggaagcaa
ttgatatcctgcttagggagtggcagggcatgggacttgatcagccacaggtcgcggagaagtt
tgcaagat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTACAAGGCATGCTGAGATGGAAGCAATTGATATCCTGCTTAGGGAGTGGCAGGGCATGGGAC
TTGATCAGCCACAGGTCGCGGAGAAGTTTGCAAGATGCGACCTTTATGTCACATGTGAGCCTTG
CATAATGTGCGCAATGGCGTTGTCGATACTTGGTCTGAGATGTTTTATCTTTATTGTGTTAAAA
ATATGTAAGAGCATATGGATTTATGCTTTTTAACATGTTCATTCTTTTGACAGGAATAAGGGAG
GTGTACTTTGGTTGTGCTAACGATAAATTTGGAGGATGTGGATCAATCATGTCATTGCATCAGA
GTTCTTCTGCTGAACTGTCAGGGTGAGGGAGCAATGCAACAAGCAGCAGAAAGCTGTTTACTCA
TGATAACATGTTGCTTTTAGTGCTTCATTAGTTGCCCATTACCCTAACATTTCAATTCAATATC
ATGATTTTTGCAAACTTGCACATGCTTAATATTTTCATTTTCTTGCACGTACAACATAGTTATT
GAGTTCTTTACATCATTAATCCTGAACTCTGTTAGTTGTTTATTGAGTTCTTTACATCATTAAT
TCTGAACTCTGTTAGTTGTTTATGGCACTCCAACTTCAAACTGTTTGTCTCTTGCTAGGGAGGA
AATTCCCGGGCCAAAAGGTTACAAATGTACTGGTGGGATCATGGCGGAGGAGGCAGTGGCTCTT
TTTAGAAATTTCTACGAGCAAGGGAATCCAAATG
Conservation Information
Conserved circRNAs osi_circ_012937
PMCS 0.162663866
Functional Information
Coding potential Y
Potential coding position 11655187-11654895(+)
11655618-11655154(+)
11654942-11655221(-)
11655189-11655589(-)
Potential amino acid sequence MSLHQSSSAELSGEEIPGPKGYKCTGGIMAEEAVALFRNFYEQGNPNGYKAC*(+)
MATRHAEMEAIDILLREWQGMGLDQPQVAEKFARCDLYVTCEPCIMNKGGVLWLC*(+)
MPCHSLSRISIASISACLVAIWIPLLVEISKKSHCLLRHDPTSTFVTFWPGNFLP*(-)
MIDPHPPNLSLAQPKYTSLIHYARLTCDIKVASCKLLRDLWLIKSHALPLPKQDINCFHLSMPC
SHLDSLARRNF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017