Plant Circular RNA Database

Detail information of AT2G22190_circ_g.5

			
						 General Information
					
						CircRNA Name
						AT2G22190_circ_g.5
					
						ID in PlantcircBase
						ath_circ_014346
					
						Alias
						2:9434102-9435549
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 9434102-9435549  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT2G22190						
					
						Parent gene annotation
						
							Probable trehalose-phosphate phosphatase E
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT2G22190_circ_g.1 AT2G22190_circ_g.2 AT2G22190_circ_g.3 AT2G22190_circ_g.4 AT2G22190_circ_g.6 AT2G22190_circ_g.7 AT2G22190_circ_g.8 						
					
						Support reads
						1/1
					
						Tissues
						leaf;flower
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G22190.1:8
AT2G22190.2:8

General Information
CircRNA Name	AT2G22190_circ_g.5
ID in PlantcircBase	ath_circ_014346
Alias	2:9434102-9435549
Organism	Arabidpsis thaliana
Position	chr2: 9434102-9435549 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT2G22190
Parent gene annotation	Probable trehalose-phosphate phosphatase E
Parent gene strand	-
Alternative splicing	AT2G22190_circ_g.1 AT2G22190_circ_g.2 AT2G22190_circ_g.3 AT2G22190_circ_g.4 AT2G22190_circ_g.6 AT2G22190_circ_g.7 AT2G22190_circ_g.8
Support reads	1/1
Tissues	leaf;flower
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G22190.1:8 AT2G22190.2:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTAAAAATGTATGGTACCCTACTGCTACCTTCTCTCTGCATCTCCCACTAACTATGGCTGTTGG
AAAACACTTTGCAAGTTTCCTCACAGTATTTCGCATctcatctggctcttgcaaagaataagaa
gcattagtctcctttgcgtatttggacacaagaattccaagaccttgttttttgtctctcagta
tctgttac

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 636
Transcript exons: 9434102-9434194,9434305-9434375,9434537-9434606,9434714-
9434791,9434886-9434987,9435120-9435176,9435289-9435381,
9435478-9435549
CTCATCTGGCTCTTGCAAAGAATAAGAAGCATTAGTCTCCTTTGCGTATTTGGACACAAGAATT
CCAAGACCTTGTTTTTTGTCTCTCAGTATCTTAAAGGCGTCTTCGTCGGTACGATCATCTCCAA
TATATATAGGAAAAACATCGGTACAATTATCATATCCTAGTGATTCTAACAAAAACTCGAGTGC
TTTGCCTTTATCCCACTTAATGATTGGACGAATCTCCAATACTTTTCTTCCTTGGGTAAGCATG
AGCTTGGGGTAATTCTTCAAGACTGATCGAACTTGATGGGCCAAGTCACTCCATTTATTTTCTT
CTACGCATCGAAAGTGAACAGACGCACAAAATTTGTTGTTCTCAACTTTCGCTCCTGGAATCGA
TTGAGTGTTCTCGACTAGTTTTTTATAAACCTCGTTTATCACCGGGAGGAATTCAGTTGCGGGT
TGACAAAGAAGAGACTGATTTTCTTTCTTGTATTTAGATCCTTGCTCTGGTCCTTTGATGTCCA
TGCCATGACTTCCAGCGTAGTATAACTCAGTTAATTTCACAAAACTAGAAACCTTCTCTCTGCA
TCTCCCACTAACTATGGCTGTTGGAAAACACTTTGCAAGTTTCCTCACAGTATTTCGCAT
						
					

						Genomic sequence
						
							CTCATCTGGCTCTTGCAAAGAATAAGAAGCATTAGTCTCCTTTGCGTATTTGGACACAAGAATT
CCAAGACCTTGTTTTTTGTCTCTCAGTATCTGTTACAATGTCACTTTAATCAGTATTTATATAA
TCATTAATCTATACTATTTATATATGTTAATTTAACGAGACATTATGAATATAGAATATGTGTA
TCAGTGTATACCTTAAAGGCGTCTTCGTCGGTACGATCATCTCCAATATATATAGGAAAAACAT
CGGTACAATTATCATATCCTACACATGGTATAAATGTTAATTTCGATTAGTGAAAACTAATTAG
AAATTTCAACTTTTAAAATCAAAACCAAAACCAAAAGTAATGTAATGTAAGCCACCATTATATG
TAATTTTATTATGATCAATATATTGATAATTGGGAATGAATCAAGATTTACCTAGTGATTCTAA
CAAAAACTCGAGTGCTTTGCCTTTATCCCACTTAATGATTGGACGAATCTCCAATACCTGAAAT
TAAACCAGACCAGAAAAAGTAAATAATCATGATGAAAAAGTAAAATCTTAGTTGAGATATTGAC
TATTTCAAATTATTAGTATTTCTGTAAAAAAATTACTTTTCTTCCTTGGGTAAGCATGAGCTTG
GGGTAATTCTTCAAGACTGATCGAACTTGATGGGCCAAGTCACTCCATTTCTGAAAATTTATAT
ATTAGTTGCTTGGTTATGTTTAAATTACGTATGTTATTACTGTATGGTCAATCTAATATAAGCA
AATGATCCATATATACATTTTCTTCTACGCATCGAAAGTGAACAGACGCACAAAATTTGTTGTT
CTCAACTTTCGCTCCTGGAATCGATTGAGTGTTCTCGACTAGTTTTTTATAAACCTATAAACAT
AATGAAAGACAAAATATTAAATAAGTATAGCTATATTTATATCTATGTGAAAAAAAACTATCAT
AATAAAATTTTATATTTAATAAAAGAAGACATCATGATTGATTGGAGTAGAATGTGACCTCGTT
TATCACCGGGAGGAATTCAGTTGCGGGTTGACAAAGAAGAGACTGATTTTCCTGAATTTTATCT
TAAAAATGAGAAAAATGGAGGTAAAAAGAAAAATATTTATGTTTCATAATACACAGTTTATGTT
TTTTCTTGGCAAAAATAATTTTTATGTATTCATACTTTCTTGTATTTAGATCCTTGCTCTGGTC
CTTTGATGTCCATGCCATGACTTCCAGCGTAGTATAACTCAGTTAATTTCACAAAACTAGAAAC
CTGAAACATAATCAAATAAAATAATAATTAAAATAAATTTTACTTTTATTAAATAATTAAAATG
AAATTTAAAAATGTATGGTACCCTACTGCTACCTTCTCTCTGCATCTCCCACTAACTATGGCTG
TTGGAAAACACTTTGCAAGTTTCCTCACAGTATTTCGCAT
						
					

			
		

Sequences
Splice junction sequence	TTAAAAATGTATGGTACCCTACTGCTACCTTCTCTCTGCATCTCCCACTAACTATGGCTGTTGG AAAACACTTTGCAAGTTTCCTCACAGTATTTCGCATctcatctggctcttgcaaagaataagaa gcattagtctcctttgcgtatttggacacaagaattccaagaccttgttttttgtctctcagta tctgttac
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 636 Transcript exons: 9434102-9434194,9434305-9434375,9434537-9434606,9434714- 9434791,9434886-9434987,9435120-9435176,9435289-9435381, 9435478-9435549 CTCATCTGGCTCTTGCAAAGAATAAGAAGCATTAGTCTCCTTTGCGTATTTGGACACAAGAATT CCAAGACCTTGTTTTTTGTCTCTCAGTATCTTAAAGGCGTCTTCGTCGGTACGATCATCTCCAA TATATATAGGAAAAACATCGGTACAATTATCATATCCTAGTGATTCTAACAAAAACTCGAGTGC TTTGCCTTTATCCCACTTAATGATTGGACGAATCTCCAATACTTTTCTTCCTTGGGTAAGCATG AGCTTGGGGTAATTCTTCAAGACTGATCGAACTTGATGGGCCAAGTCACTCCATTTATTTTCTT CTACGCATCGAAAGTGAACAGACGCACAAAATTTGTTGTTCTCAACTTTCGCTCCTGGAATCGA TTGAGTGTTCTCGACTAGTTTTTTATAAACCTCGTTTATCACCGGGAGGAATTCAGTTGCGGGT TGACAAAGAAGAGACTGATTTTCTTTCTTGTATTTAGATCCTTGCTCTGGTCCTTTGATGTCCA TGCCATGACTTCCAGCGTAGTATAACTCAGTTAATTTCACAAAACTAGAAACCTTCTCTCTGCA TCTCCCACTAACTATGGCTGTTGGAAAACACTTTGCAAGTTTCCTCACAGTATTTCGCAT
Genomic sequence	CTCATCTGGCTCTTGCAAAGAATAAGAAGCATTAGTCTCCTTTGCGTATTTGGACACAAGAATT CCAAGACCTTGTTTTTTGTCTCTCAGTATCTGTTACAATGTCACTTTAATCAGTATTTATATAA TCATTAATCTATACTATTTATATATGTTAATTTAACGAGACATTATGAATATAGAATATGTGTA TCAGTGTATACCTTAAAGGCGTCTTCGTCGGTACGATCATCTCCAATATATATAGGAAAAACAT CGGTACAATTATCATATCCTACACATGGTATAAATGTTAATTTCGATTAGTGAAAACTAATTAG AAATTTCAACTTTTAAAATCAAAACCAAAACCAAAAGTAATGTAATGTAAGCCACCATTATATG TAATTTTATTATGATCAATATATTGATAATTGGGAATGAATCAAGATTTACCTAGTGATTCTAA CAAAAACTCGAGTGCTTTGCCTTTATCCCACTTAATGATTGGACGAATCTCCAATACCTGAAAT TAAACCAGACCAGAAAAAGTAAATAATCATGATGAAAAAGTAAAATCTTAGTTGAGATATTGAC TATTTCAAATTATTAGTATTTCTGTAAAAAAATTACTTTTCTTCCTTGGGTAAGCATGAGCTTG GGGTAATTCTTCAAGACTGATCGAACTTGATGGGCCAAGTCACTCCATTTCTGAAAATTTATAT ATTAGTTGCTTGGTTATGTTTAAATTACGTATGTTATTACTGTATGGTCAATCTAATATAAGCA AATGATCCATATATACATTTTCTTCTACGCATCGAAAGTGAACAGACGCACAAAATTTGTTGTT CTCAACTTTCGCTCCTGGAATCGATTGAGTGTTCTCGACTAGTTTTTTATAAACCTATAAACAT AATGAAAGACAAAATATTAAATAAGTATAGCTATATTTATATCTATGTGAAAAAAAACTATCAT AATAAAATTTTATATTTAATAAAAGAAGACATCATGATTGATTGGAGTAGAATGTGACCTCGTT TATCACCGGGAGGAATTCAGTTGCGGGTTGACAAAGAAGAGACTGATTTTCCTGAATTTTATCT TAAAAATGAGAAAAATGGAGGTAAAAAGAAAAATATTTATGTTTCATAATACACAGTTTATGTT TTTTCTTGGCAAAAATAATTTTTATGTATTCATACTTTCTTGTATTTAGATCCTTGCTCTGGTC CTTTGATGTCCATGCCATGACTTCCAGCGTAGTATAACTCAGTTAATTTCACAAAACTAGAAAC CTGAAACATAATCAAATAAAATAATAATTAAAATAAATTTTACTTTTATTAAATAATTAAAATG AAATTTAAAAATGTATGGTACCCTACTGCTACCTTCTCTCTGCATCTCCCACTAACTATGGCTG TTGGAAAACACTTTGCAAGTTTCCTCACAGTATTTCGCAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.185592622

Conservation Information
Conserved circRNAs	NA
PMCS	0.185592622

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT2G22190_circ_g.5

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