Detail information of BGIOSGA013582_circ_g.1


General Information
CircRNA Name BGIOSGA013582_circ_g.1
ID in PlantcircBase osi_circ_013666
Alias Chr03:34176427_34177400(MH63RS2), Chr03:34176427_34177400(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 35350321-35351294  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2
Parent gene BGIOSGA013582
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA013582_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA013582-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCTGTGAATTTTACAAGACATCTCACGAAACGATGTTTCAAACAGGCGATTTTGGGGTAGCT
GCCCAGCTGACGAGAACCATGTCAAAGCGCAACACGggaagaaggatatgaagacatacgggga
gaaattgagatgctgcagcaatgcagccatccgaatgtcgtccgctacttcgggagctaccaag
gagaagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAAGAAGGATATGAAGACATACGGGGAGAAATTGAGATGCTGCAGCAATGCAGCCATCCGAAT
GTCGTCCGCTACTTCGGGAGCTACCAAGGAGAAGAATACCTTTGGGTATAATCCAATGTCCTGA
TAATATATTCTTATAATATTTTGAGATAGCTACACTATTCTTTTTTTTCCTAATATTTGTCTAC
TTGTGAACTCATTAATTATGTTTGATGTGTGCTTCAATTTGCAGATAGTTATGGAATACTGTGG
TGGTGGAAGCGTTGCTGATTTGATAGGCATAACAGAGGAGCCTCTTGATGAATCCCAAATAGCT
TATATATGTAGAGAAGCACTAAAGGTTCATTTTTTTCATACTTCATATGACTCAATTGTATGTA
GGATTTAACTATTATCTTAAGTAGCTATGAGCTTTGCTACTTTTATTGCATTAAAATTCGCCAT
CAGATTTAACGGTATTCTATTAAGCCGGAATAATGCTACAGATGACCTTTAGAGGCCCAACAAA
AAACTGGGCACCCTTATGGTGACCATTTCCAGATATTTTACTTGCATATTTTCTGTTGCAGGGT
CTTGCTTACTTGCATTCAATTTTTAAAGTTCATAGAGATATTAAGGGTGGCAATATTCTGCTAA
CTGAGCAAGGAGAGGTGAAGTTGGGTAAGTCAAGTTGTTCTCTGGACCTCTGGTATGCTTCAAT
TAAATTGTTAGGGCTTGTTTGGGTAGGGATAGGATGGGTGGGATAAGGATGGAGGTTTACACTG
AAGATTGGTGAAAGATGGGGAGGATTACCAACTTCCATTTTCTCAATCCCTGTTCCATGCCTCT
ATCCCTGAATCCAAATACCCAGTTAGTGTTTATTTGAGCCTACATCTGTGAATTTTACAAGACA
TCTCACGAAACGATGTTTCAAACAGGCGATTTTGGGGTAGCTGCCCAGCTGACGAGAACCATGT
CAAAGCGCAACACG
Conservation Information
Conserved circRNAs osa_circ_021949 osa_circ_021948
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021