Detail information of Os01g0610600_circ_g.1


General Information
CircRNA Name Os01g0610600_circ_g.1
ID in PlantcircBase osa_circ_002579
Alias NA
Organism Oryza sativa
Position chr1: 24157018-24160873  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0610600
Parent gene annotation Endonuclease/exonuclease/phosphatase domain containing protein.
(Os01t0610600-01);Similar to endonuclease/exonuclease/phosphatas
e family protein. (Os01t0610600-02)
Parent gene strand -
Alternative splicing Os01g0610600_circ_g.2 Os01g0610600_circ_g.3 Os01g0610600_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0610600-02:1
Os01t0610600-01:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCAATCCATGATGAAAGATGGTATGCGCTCATAAAGAAACTGGTGCTCCTGGGCCAGATAAT
CAGCTAGTATATTGTATGATAGAACCTTAAACCTCTctccacatctgtgtagacacttcggact
ttcaaattatgttccacgaaggtgcaatcttcattcccagtagcagctttaatttcatctggtg
tccacctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCACATCTGTGTAGACACTTCGGACTTTCAAATTATGTTCCACGAAGGTGCAATCTTCATTC
CCAGTAGCAGCTTTAATTTCATCTGGTGTCCACCTGTATGGATCATAATCGTAATATCTTTTAT
CAGAAGTAATCACTTGCTGGGCAGATGGTGAACCATCTGAGGTTGTTTGCAGCTGGTCTTCATC
TTCAAGTAAAAATTCATTAACACCAGAAAACTCTTTAAAGATGGAAGGATCTGCATTCACATCT
GAGCACAAAACTTCATTGGATGCCCCATCATCCTCAAAAGCACAAGAACAATTTCCAAGCTCAT
TTGAACATGAATGCGATTTTGAAAGCCTGTTTATCACTTCAGGTGTACATTGAACATCACAAGT
GTCAGAAAAGGCACAATCTGTGTGTTGCAAAGGCTCTAGTGGTGATGTTAACTGAGTTGGCTCA
GTATTGTTTTCTTCTTCTAGCCTCAGATTACTCATTTGATGAAGTGTATCAGCAAACTTCAGGG
GATCACTGAAACAATTTGATTTTGATTCACTACGCATGCAATTATTTTGAGTAGACAAAGGTTC
ACTGTCTTGTTCCTTTTCATCGGGTCTGACCTTTGATATATCAAACAGTGTATCTGACTGGACA
TTGTTTCGCTCAAAATCACAAGTAGCTTTTCCAGAAATCACATGACCAGGAAAGTTTGCCAGGG
TATTTGAACTGTTATTGCTACCACCAGCTAATTCTTCCCAAGAATCTTTAGATTCAGATGATTC
ATAAGATGGAAGAAGCTGACTTCTATCAACTATTTCACTCGAATCTGACTGAAGGGTCTCATCA
TTTACTGTCGTTGAAGCAGACGAAAAGTTTGTAACGTTAGTTTCTTCTACAGAGCTCTTTTTTA
TTACTCCATATCCTTCACTGGAGTTGTTAACCACTGAAGTTTCTTCACCATTAGTGGTGTTGGT
ATGTGCTTCAGCATCAGATGTATAGGCTTCCTTTGTAGGACCTTTCACACAGCCCATTAATTCT
TGCTCGTGAGGATTTGTAGAGCTCTCTGGGTTTAAGAAAGAGTCTGAAGCAGTATCAGTCAAAG
TTGGTTCTCTGCCAGAAAGACGAGAATTTTCCGTTACATTTCTTGCTTCAGGTTGAGGCTTATG
ATCATTTGGGTAACTTATGCTACCCTCCTTACTATTCGTCGTGTGAAAAGGCGGATAGAATCTG
TTAAATACCAAAAAGCATCAAACAAAGGTCAGTTAGGTTAAAATATGCAGAAAAAATTGTCAAA
AGAGGGTGTCTCTGATAAAGCAGAAGGTTCACCGAGCTGTGTTAGGACCAGTATATAGTCCCTG
TGCAGTACTAGTTTGCTGCCCTGATATATTACTCTTCACAAGACCGGACAGATTCAACTGCATG
ATTATTATGTTGTGTGAGTTTCAGTTTCTCAAAAACAGCCATTTTCAAGTTAATACAGAACACT
CTTTACCTTTTGCTCCAGCATAAAATTGTACAGAGGGCTCTGAATGAGGAAGAAATGGGTCAGA
CATTTTGACCTTGTTACATGTAAGCATGTAATAAAATGTCCAAGAAATACAGTGAACCAGATAT
GAATCTTTAATATAAAATGGTAAGGTACTGAATATTGCCTTGGGTGTAGAGTTGAAATCTCCAC
AAATTATTACTGGAGCATCATTCCATGTCTTTGATAGAGCATACACTCGATCAAGAAGCGTCCT
TACCTGTAAGTATGACAAGAAAATTAGTATTCAAATAATACGTATGAAGGTGCATAATGTACTG
ACTATTGATGGTCAAGAAAGATGATAGAAATACTAGGTAATGCAGCTATACTTTGTTTCAGTGA
TGAAAGTATAAAACAAGATAATAGCAAAAGACCACAACCCACCTAGTCATCTACAACGAGAGGG
TGGAAAACAATGCACGATCTCAAATGATGCCATGAAAGCATCAGAAAGCAACACGATGGAAGAT
AAGGTGTACATTGTTGCTCAGTACTTAAGGTCTAACAAGGTGTTATTTCTTTACCATGTTATAC
TAAAAACAAAAGTGCTTAGGCCAAGAGGCTAATTCTGGTGAAAAAAAAATCATACTATAAAAGT
CTGAACTAATGTAGGAAATTAAGACTCACGAGTGACCACAACATAATACCTGACCAAGTTTGAT
GTCCCCTCTCTTTGGATTGTAAAGAACATGAGTATTGCATACAATAATTTGCTTAGCTTGTTGA
GGATGGTTAGGGCTGTGAAACGAAAGAATGGTTATAAAAACATGGATAGATAATACCAATGTGG
ACATGTGGGTTATGAAATTTTCTCTTCAATAATAAAGGAACGTGGAATAGGAACTACACAAGCC
AGAAACAACTAATAAAAAGGAGACAGCATAACACCATTGTCACAACTCACAACTGTGATGCATA
GTTTAGAAATCTTGAAGTTTCAATTACCTAGACTCAGTTTGCACATTTCCTGGAATCACCGACT
GAAAAATATAATGAGGAAACGATTAGCAGATATAGGCCATGCAAGATTGGCAGCATAAAGAAAG
CTTCAATTCAAAGTGATCAGTAGTTTGCCCAACGATTTCAAGCCCACCTCTAAAACACAAATCT
GTGCAACATTATCACGGAGATCAATCTTATTGAACTCGATATCCTCTTGATAGCGCAACTGAAA
CCTACAAGATGAAAAATTTTGGATGACTATGAGAAGTCAAAGTAGAAGTTTTTTAATGTAGGTA
TAACATCAGGAGAAATAATTTTGTATCATACAAAAGGTTTCTTTCTTTAAAAAAAAGAAGAAGA
AGGGAAAGACAGGATTGACACACCTAGCTGTTCGCCAAAAGATCGCACATCCATCAGTGGCATT
TCCAGTCCGCATCTGTACCAAAGGTCCAGCATAATGCGTAAATCATACGGTCAAGCAGATTCAA
GAAAATTGTGTTTCCTCAATGGCAATCACTAATGAAAGTTTCAGTTCTGCGCATGCTATGTAAT
CAAGTAACTGTAAATGAGTAGTTAGAAGCACTGGCCATTTTTGCACAACTATATTTTGTCCACT
TCATCAACAGAGTAATTCCTGTGATATATACCCACTCTGTCGATTTTTATAGGGAATATTTTCA
TTTAAAAAAACAAATTGTAGATTTTGACCAAGAATTAGTCAAATGACCAGTAAATTTAGTGTGT
ATAAATTATAACGATAGATATAAATTCATACTTCAAAATGCTTTCGAACATCGGTTTAAAACTA
TTGGATATTACCTTCCATATGCCATTATATCCTCGAGTTGCCATTTCTTGCTCAAGGTCTGTAA
ATTTGTCAACCTCCTACAGGCATAACCAAGGAATATAAGTCTAACGTGTGTCAATATAGATCCC
ATTTAATCATTAATATCAAAGAAATGTGTTTATAGCATACAGGTTATATTCATCAAGAAGTGTC
AAAAAACTAACAAACTTTATCCTTTGTATGATTTCTAGTTGACAATGTTATATGCAGCTATTGA
ACTAGCAGGGAGTGACCATGTAGACTAGTGGCCTTGCAATTCCTTGCAATTTTCCAAATTTCAA
CTTTTCGAGATAACATAACTAGCTCCACGAAGGTATTACCACTTTTTTAACTATTGACTTAGCA
GCACAACCCTTCTGAATTACTGCAGTACAGCAGTTATAAATTACCTGAAGACATAAAATATCTG
GAGACCACAAACCAAACTCGAACACTAACTTTTCCTTCCGCCAGTTCCAATCCATGATGAAAGA
TGGTATGCGCTCATAAAGAAACTGGTGCTCCTGGGCCAGATAATCAGCTAGTATATTGTATGAT
AGAACCTTAAACCTCT
Conservation Information
Conserved circRNAs NA
PMCS 0.096012887
Functional Information
Coding potential Y
Potential coding position 24160786-24160843(-)
Potential amino acid sequence MDWNWRKEKLVFEFGLWSPDILCLQEVDKFTDLEQEMATRGYNGIWKMRTGNATDGCAIFWRTA
RFQLRYQEDIEFNKIDLRDNVAQICVLESVIPGNVQTESSPNHPQQAKQIIVCNTHVLYNPKRG
DIKLGQVRTLLDRVYALSKTWNDAPVIICGDFNSTPKSPLYNFMLEQKLNLSGLVKSNISGQQT
STAQGLYTGPNTARFYPPFHTTNSKEGSISYPNDHKPQPEARNVTENSRLSGREPTLTDTASDS
FLNPESSTNPHEQELMGCVKGPTKEAYTSDAEAHTNTTNGEETSVVNNSSEGYGVIKKSSVEET
NVTNFSSASTTVNDETLQSDSSEIVDRSQLLPSYESSESKDSWEELAGGSNNSSNTLANFPGHV
ISGKATCDFERNNVQSDTLFDISKVRPDEKEQDSEPLSTQNNCMRSESKSNCFSDPLKFADTLH
QMSNLRLEEENNTEPTQLTSPLEPLQHTDCAFSDTCDVQCTPEVINRLSKSHSCSNELGNCSCA
FEDDGASNEVLCSDVNADPSIFKEFSGVNEFLLEDEDQLQTTSDGSPSAQQVITSDKRYYDYDP
YRWTPDEIKAATGNEDCTFVEHNLKVRSVYTDVERGLRFYHTIY*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017