Detail information of BGIOSGA033182_circ_g.1


General Information
CircRNA Name BGIOSGA033182_circ_g.1
ID in PlantcircBase osi_circ_008554
Alias Chr10:20935775_20936371(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 17516712-17517308  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA033182
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   CC-CA
Number of exons covered BGIOSGA033182-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAATGTGACCATAGATGACTAGAATTCCAACCCCGATCGATGTCCCCAAACAAAATTAAATTT
AATCAACCACAACTTTTACGACAATCTCTAGTTTTTggtaattaatagactccggctcatccat
gttgactgactaaaattttgaccatccaaactacacctagactgtctagactgtgtttagttca
cgtcaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAATTAATAGACTCCGGCTCATCCATGTTGACTGACTAAAATTTTGACCATCCAAACTACAC
CTAGACTGTCTAGACTGTGTTTAGTTCACGTCAAAATTAAAAGTTTGGTTAAAATTAGAACGAT
ATGATGAAAAAGTTTAAAGTTTATATGTGTAGGAAAGTTTTGATGTGATGGAAAAATTGGAAGT
TTGAAGAAAAACTTCGGATCTAAACATGGTGATAATCAACGATAATATTTACGGTGTTCCTACT
AAGACTTCGTTCGGCAATGGCTAAATTAAAGAGAGTAAAACTATTTCGTTTTCTGCACGCACGT
CCCAAACATTGTGTTTATTTTTAAAAAATTCTAGAAAAGTTATTTTTAAAAATATATCAATTCG
TTTTTTAATTTAAAATAATTAATGCTTAATTAATCATACACTAATTGCTCATCTTGTTTTATAT
ATCTTCTCAATTTTTCTCTTTCCCATCATCTTAAACACACCCACTTTAATAAATGTGACCATAG
ATGACTAGAATTCCAACCCCGATCGATGTCCCCAAACAAAATTAAATTTAATCAACCACAACTT
TTACGACAATCTCTAGTTTTT
Conservation Information
Conserved circRNAs osa_circ_007234 osa_circ_007235
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021