Detail information of 5_circ_igg.6


General Information
CircRNA Name 5_circ_igg.6
ID in PlantcircBase ath_circ_042951
Alias At_ciR1249, Ath_circ_FC3710, Ath_circ_FC3711
Organism Arabidpsis thaliana
Position chr5: 19346097-19350990  JBrowse»
Reference genome TAIR10.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT5G47770_circ_g.3 AT5G47770_circ_g.4 AT5G47770_circ_g.5 AT5G47770_circ_g.7 AT5G47780_circ_g.1 AT5G47780_circ_g.2 AT5G47780_circ_g.3 AT5G47780_circ_g.4 AT5G47780_circ_g.5 AT5G47780_circ_g.6 AT5G47780_circ_g.7 AT5G47780_circ_g.8 AT5G47780_circ_g.9 AT5G47780_circ_g.10 AT5G47780_circ_g.11
Support reads 4/33
Tissues leaf/aerial, inflorescences
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATGACTCTGACAATACGTTTTGACTTGTGTAGTTTATTGTATATTCAGTTTAACTCTGTCACC
CGCCGTGTTCAACCTTGCTGGTTCAGAGTTCCACAGgttggtatggttgccatcaatgatggga
ttctacttcgcaatcacatccacaggattctcaaaaagcatttccgtgataagccttactatgt
tgaccttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGGTATGGTTGCCATCAATGATGGGATTCTACTTCGCAATCACATCCACAGGATTCTCAAAA
AGCATTTCCGTGATAAGCCTTACTATGTTGACCTTGTTGATTTGTTTAATGAGGTAATCTGTTT
TGGCAGATCTACTATTCTCTTTTCCACTTTTGATATTTTATCCTCAGTCTATTATTCCATTTGC
TGTCTAGGTTGAGTTGCAAACAGCTTGTGGCCAGATGATAGATTTGATCACCACCTTTGAAGGA
GAAAAGGATTTGGCCAAGTACTCATTGTCAATGTGAGTCAACTGTGGGCATTGTCTAAATTTTA
GATACGGTTTCTTCTGATGGTTGATTAGATGAAAGGCAGTATTCTGACCTGATGCAATGGTTTT
CAACTTGCAGCCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCCTGT
GAGTATGGATTCTCTTCTTCCCTAGTCATATTTGGGGTCAAAAACAATCATGTTATTCCTTTTG
TCTCCATCATTGCAATTGTAGATCCCGTGACAAGCTGTGTTTTTCTATTCAGGTTGCTTGTGCG
TTGCTTATGGCCGGCGAAAATTTGGAAAACCATATTGATGTGAAGAATGTTCTTGTTGACATGG
GAATCTACTTCCAAGTGCAGGTAGATTGCTGTTAAGTATTCATGAGAGCTATATGATAGGTAGT
GTTGGGATGTTGATAACCATTCTTTTGTGTAGGATGATTATCTGGATTGTTTTGCTGATCCCGA
GACGCTTGGCAAGGTTTCACTCGTGCTAACACTTGGTTTCTCAGGCTGATGTGAATGTATTCAC
TTGGTTCAGCATATTGGTTTTTTATAATGCAGATAGGAACAGATATAGAAGATTTCAAATGCTC
GTGGTTGGTGGTTAAGGCATTAGAGCGCTGCAGCGAAGAACAAACTAAGATATTATATGTAAGA
ACCATATCATCTTGATCAAAAAGGTTTGTATCCTGTTTGGAACCTGAAACATGTTTTGTTCTGA
TTTACTAGGAGAACTATGGTAAACCCGACCCATCGAACGTTGCTAAAGTGAAGGATCTCTACAA
AGAGCTGGATCTTGAGGTTTGTAGCGAACCTCAGAGATATGATGTTGTAATACACAACTAACAT
TTTTGCTAATTGGACATGGTTTGATCTGAACATGATAGGGAGTTTTCATGGAGTATGAGAGCAA
AAGCTACGAGAAGCTGACTGGAGCGATTGAGGGACACCAAAGTAAAGCAATCCAAGCAGTGCTA
AAATCCTTCTTGGCTAAGATCTACAAGAGGCAGAAGTAGTAGAGACAGACAAACATAAGTCTCA
GCCCTCAAAAATTTCCTGTTATGTCTTTGATTCTTGGTTGGTGATTTGTGTAATTCTGTTAAGT
GCTCTGATTTTCAGGGGGAATAATAAACCTGCCTCACTTTTATTCTTGTGTTACAATTGTATTT
GTTTCATGACTATGATCTTCTTCTTTCATCAGTTATATGAATTTGAGATTCTTGTTGGTTGATG
CCTGTGACTACATACATAATATTGACCAACAGAAGAAGATAACTCGATACATACATTGATTTTA
TAACACTGAGATTTAAGCAACTCTTCTTCTTCTCTAATGCCTACATTCCATTCCAAAGGCAAGA
AAATAAAGCTTCAAGCGCAGGCCTCGACACGTCACCTTGTCGCTTAATTTAATACAACAACTAG
AGTTTATTTATAAATAATGGCTGTGAAGGGTAAAAGCGTCTTATCCTCAACGACCACCATCATC
ATCCAGCTAGCAGCAATTGGTTTTTCACTCACACACTAGAAACAAGAAAAAGAAAGATGGGAGA
TTTAATGGCTCGGTCTCTCTCTTGATCTGACGACGACGATGATGGTGAAGCTTCGCAATCTTGT
TCTTTTCTTCATGCTCCTCACCGTCGTTGCTCATATCCTTCTCTACACCGATCCCGCTGCCTCC
TTCAAGACCCCCTTTTGTCAGTAGTTCTCTCTCTCTTTCTCAATTCTCCGATTTGAAATTTGCT
TCTTATCATCTTCTTTGTTTCGTTCTGTAGCTAAACGCGATTTCCTCGAGGACGTAACCGCCTT
GGTCCGTATCTTCTTCCCTCTATCTCTCTCTCTCTTTTGATCTTCCCTTCCATTGCGTCACATT
GTGTGTTTCCTTTTCAGACTTTCAATTCCGATGAGAATCGTTTGAATCTTCTTCCTCGGGTACC
TTTTCTTTTTCCAGTTACTTATTGATTCGCCTCACTCAGATCTTAGCTCGTTTCTTCACTTTCT
TCTTCACATTCATCTTTAGGAATCTCCCGCTGTGCTCAGAGGAGGACTCGTCGGTGCTGTCTAT
TCCGATAAGAATTCACGGCGGCTAGGTAACTTCAATTCTCTCACTCGCCTCTCTCTGTGATGTC
TTCCTTACTTGACTTGATTATTTTTTTTAACATTCTCAGACCAATTGTCTGCTCGAGTTCTTTC
CGCCACCGACGATGATACTCACTCACATACTGACATTTCCATCAAACAAGTCACTCATGATGCA
GCCTCAGACTCGCATATTAATAGGGTACGTGTTTTCCGGAGAATCAGATTGGATATTCCCTAAG
TTGATTGGCTCCAGATTTGAATTTGATGCTTGGTAATAGTATATATTTGGATCCTTGTAGGAAA
ATATGCATGTTCAATTGACCCAACAAACCTCTGAAAAAGTTGATGAGCAACCAGAGCCTAATGC
TTTTGGAGCTAAGAAAGATACTGGAAACGTGTTGATGCCTGATGCTCAAGTGAGGCATCTTAAA
GATCAGCTTATTAGGGCAAAGGTTTATCTTTCCCTTCCATCTGCAAAGGCCAATGCTCATTTTG
TGAGAGAGCTTCGACTCCGTATTAAAGAAGTTCAACGGGCACTTGCAGATGCCTCCAAGGATTC
GGATCTGCCAAAGACGTAAGTGTTTCTCACCTCTTGAAATATATGTTTCTTCCTCTTTAACTGA
TATTTCTCTGCCATTTTTTTGAACCCCAGTGCTATAGAAAAGCTAAAAGCAATGGAGCAAACAC
TGGCCAAAGGCAAGCAGATCCAAGATGACTGTTCTACAGTGGTCAAGAAGCTACGTGCTATGCT
CCACTCCGCAGATGAGCAGCTACGGGTCCATAAGAAGCAAACCATGTTTTTGACTCAATTGACT
GCTAAGACCATTCCTAAAGGACTTCACTGCCTTCCTCTGCGCCTCACTACAGACTATTATGCTT
TAAATTCATCTGAACAACAATTTCCAAATCAGGAGAAACTAGAAGATACTCAGCTGTATCACTA
TGCCCTTTTCTCTGATAATGTTTTGGCTACGTCAGTTGTTGTTAACTCTACCATAACCAATGCA
AAGGTAAGAATTAACTTTCTTCTTTTGTTTGAACATGTAACTGTGTTTCTTTCTGTTAAACTTA
CGGTCTTAATGGTTTATTGGCAGCATCCCTTAAAGCATGTCTTCCACATCGTCACAGACAGACT
CAATTATGCGGCAATGAGGATGTGGTTCCTGGACAATCCACCTGGCAAAGCCACCATCCAGGTT
CAGAATGTTGAAGAATTTACATGGCTGAATTCAAGCTACAGTCCCGTTCTCAAACAGCTTAGTT
CTAGATCGATGATAGATTATTACTTCAGAGCCCACCATACAAATTCAGACACCAACTTGAAGTT
CCGGAATCCAAAATACTTATCGATCCTTAATCATCTTCGTTTTTACTTGCCTGAGATCTTTCCC
AAGCTCAGCAAAGTGCTCTTCTTGGATGATGATATAGTTGTGCAGAAGGACCTTTCTGGTCTTT
GGTCAGTTGATCTGAAAGGTAATGTTAACGGTGCTGTAGAGACGTGTGGGGAAAGCTTTCATCG
CTTTGACCGTTATCTGAACTTCTCAAATCCACTCATTTCCAAGAACTTTGACCCTCGAGCTTGT
GGTTGGGCGTATGGTATGAATGTCTTTGATCTGGATGAATGGAAGAGGCAAAACATCACAGAAG
TTTATCATCGATGGCAGGATCTGGTATGCAGAAAATATATATATGCTAGGTCGCATCTGTTTTG
ATTTCAAGAATGTTTGCTAATCATATACACGAACGATTTTAAACTGCAGAATCAAGACCGAGAA
TTGTGGAAGCTAGGGACGTTGCCGCCTGGTCTAATCACATTTTGGAGACGAACATATCCGCTAG
ACCGGAAATGGCACATACTAGGGCTTGGATACAACCCGAGTGTGAACCAAAGGGATATTGAGAG
GGCAGCCGTGATACACTATAATGGCAACCTCAAACCATGGCTAGAGATTGGGATTCCAAGATAC
AGAGGCTTCTGGTCAAAGCATGTAGACTATGAGCACGTTTATCTCAGAGAATGCAACATCAATC
CTTAGAATTAGAGTCTGTTGTGAGGGCAATATTATACGTTTATAATCTGACGAGATGATCATTA
CATGAAATTGTATATGTCACGGTAAAAGGAGTTCCAATAGGCACGACCGATGTTATTATTGCAA
CATATATATCAACAAGAGGAATGACAACGAAACAATGAAACAACTACTTTTCGTATTCCTTTTT
GTCGCTGTTTATGTAAAGCAAGTGACAATTGACATAGGTCTATAGGAGACTTTAGACTTTAATC
AAATTTGCCAAAGAGCAATACAACATAAATAGTCAAGCCGATTATCGAACCAGAGTAGCATGAA
TATTAGCCCAGTGAAGACGAAAAGAGATTCGAATCGGAATTACGTGAATGTGATTTCGAATGAC
TCTGACAATACGTTTTGACTTGTGTAGTTTATTGTATATTCAGTTTAACTCTGTCACCCGCCGT
GTTCAACCTTGCTGGTTCAGAGTTCCACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.548330145
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA