Detail information of AT1G47550_circ_g.13


General Information
CircRNA Name AT1G47550_circ_g.13
ID in PlantcircBase ath_circ_006171
Alias NA
Organism Arabidpsis thaliana
Position chr1: 17459976-17460233  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene AT1G47550
Parent gene annotation Exocyst complex component sec3A
Parent gene strand +
Alternative splicing AT1G47550_circ_g.1 AT1G47550_circ_g.2 1_circ_ag.3 1_circ_ag.4 1_circ_ag.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 AT1G47550_circ_g.9 1_circ_ag.10 AT1G47550_circ_g.11 1_circ_ag.12 1_circ_ag.14 1_circ_ag.15 1_circ_ag.16 1_circ_ag.17 1_circ_ag.18 1_circ_ag.19 1_circ_ag.20 1_circ_ag.21 1_circ_ag.22 AT1G47550_circ_g.23 1_circ_ag.24 1_circ_ag.25 1_circ_ag.26 AT1G47550_circ_g.27 1_circ_ag.28 1_circ_ag.29 1_circ_ag.30 1_circ_ag.31 1_circ_ag.32 AT1G47560_circ_g.1
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-CG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACTTCTGAAATCTGCAAGAGTAGGAGTGAAAGAGAAATTTATTTCAAGTATATTTGTTGTTGG
ACTGATCAAACCATTATATGTCAACACATGTTCTCAgtaggactcttgacctataaatgatctt
ttttgctgtgttctattatgaggacaatgtcactgcagtgagaaattagttgttgtatgttgtc
aataaact
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 258
Transcript exons: 17459976-17460233
GTAGGACTCTTGACCTATAAATGATCTTTTTTGCTGTGTTCTATTATGAGGACAATGTCACTGC
AGTGAGAAATTAGTTGTTGTATGTTGTCAATAAACTCTTCTCATGGATATACATTGCTTTACTA
TTTCTTTTTGGTTCGTAATTTCTTTCACAGTACTTCTGAAATCTGCAAGAGTAGGAGTGAAAGA
GAAATTTATTTCAAGTATATTTGTTGTTGGACTGATCAAACCATTATATGTCAACACATGTTCT
CA

Genomic sequence GTAGGACTCTTGACCTATAAATGATCTTTTTTGCTGTGTTCTATTATGAGGACAATGTCACTGC
AGTGAGAAATTAGTTGTTGTATGTTGTCAATAAACTCTTCTCATGGATATACATTGCTTTACTA
TTTCTTTTTGGTTCGTAATTTCTTTCACAGTACTTCTGAAATCTGCAAGAGTAGGAGTGAAAGA
GAAATTTATTTCAAGTATATTTGTTGTTGGACTGATCAAACCATTATATGTCAACACATGTTCT
CA
Conservation Information
Conserved circRNAs NA
PMCS 0.39339889
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017