Plant Circular RNA Database

Detail information of Os06g0488200_circ_g.6

			
						 General Information
					
						CircRNA Name
						Os06g0488200_circ_g.6
					
						ID in PlantcircBase
						osa_circ_030909
					
						Alias
						Os_ciR1491
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 16780846-16782525  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, PcircRNA_finder, find_circ
					
						Parent gene
						
							Os06g0488200						
					
						Parent gene annotation
						
							Similar to Myosin heavy chain (Fragment). (Os06t0488200-01);Simi
lar to XIC (Myosin-like protein XIC); motor/ protein binding. (O
s06t0488200-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os06g0488200_circ_g.4 Os06g0488200_circ_g.5 						
					
						Support reads
						9/1
					
						Tissues
						root/shoot, root, seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0488200-01:7
Os06t0488200-02:7

General Information
CircRNA Name	Os06g0488200_circ_g.6
ID in PlantcircBase	osa_circ_030909
Alias	Os_ciR1491
Organism	Oryza sativa
Position	chr6: 16780846-16782525 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, PcircRNA_finder, find_circ
Parent gene	Os06g0488200
Parent gene annotation	Similar to Myosin heavy chain (Fragment). (Os06t0488200-01);Simi lar to XIC (Myosin-like protein XIC); motor/ protein binding. (O s06t0488200-02)
Parent gene strand	+
Alternative splicing	Os06g0488200_circ_g.4 Os06g0488200_circ_g.5
Support reads	9/1
Tissues	root/shoot, root, seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0488200-01:7 Os06t0488200-02:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GTTTAAGCAGCAACTTACGGCGTATGTGGAAAAGATATATGGAATGATCCGGGACAATTTGAAG
AAAGAGATCTCTCCTTTGCTTGGTTTGTGCATTCAGacctcactacaatcagaaaaacaaagag
cggatgatttggaaaaaaaacgctctgaagaacaacaagcaaatgaagaaaaacaaaagaaaat
ggaagaga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 918
Transcript exons: 16780846-16780985,16781320-16781431,16781520-16781570,16
781654-16781734,16781828-16781998,16782079-16782234,1678
2319-16782525
ACCTCACTACAATCAGAAAAACAAAGAGCGGATGATTTGGAAAAAAAACGCTCTGAAGAACAAC
AAGCAAATGAAGAAAAACAAAAGAAAATGGAAGAGACTGATGTAAAAATGCGTCAATTCCAGGA
ATATCTTAGAAGGTTAGAGGAGAAGCTCGCTAATGTAGAATCTGAGAATAAAGTCCTTCGTCAG
CAAGCTGTCTCAATGGCTCCAAGTAAAATTTTGTCAGGCCGTTCCAAGTCCATTTTACAGAGGA
ATGCAGAAAGTGTTCATGTATCAAGCGGCGATTCGAAAGCAGCCCCAGAGTCCAATAACATATC
CTCTCCTAAAAAGGAATTTGACTTCGATGATAAGCCACAGAAGTCACTTAATGAAAAGCAGCAG
GAAAATCAAGATCTATTAATTAGGTGCATTGCTCAGCATTTGGGCTTTGCTGGAAATCGGCCAG
TCGCTGCTTGCATCATATACAAGTGCCTTCTTCACTGGAGATCATTTGAAGTAGAGAGGACAAG
TGTTTTTGACCGCATTATTCAGACCATTGGTCATGCTATTGAGACACAGGACAACAACGAAGTC
TTAGCATATTGGCTCTCAAATGCTTCAACACTTCTGCTGTTGCTTCAAAGGACACTGAAGGCAA
GTGGATCAACAGGGATGGCTCCGCAGCGACGGAGATCGTCATCCGCCACTCTTTTTGGAAGGAT
GACCCAGAGCTTCAGAGGAACTCCCCAAGGTGTGAATCTTTCTCTGATAAATGGGAGCATGGTT
AGTGGAGTAGAGACTCTACGACAAGTCGAAGCAAAGTATCCGGCGTTGTTGTTTAAGCAGCAAC
TTACGGCGTATGTGGAAAAGATATATGGAATGATCCGGGACAATTTGAAGAAAGAGATCTCTCC
TTTGCTTGGTTTGTGCATTCAG
						
					

						Genomic sequence
						
							ACCTCACTACAATCAGAAAAACAAAGAGCGGATGATTTGGAAAAAAAACGCTCTGAAGAACAAC
AAGCAAATGAAGAAAAACAAAAGAAAATGGAAGAGACTGATGTAAAAATGCGTCAATTCCAGGA
ATATCTTAGAAGGTGAAGCTTTTCGCTGTTAATTATTCTATTTTCCTATTTTTATAGGGTTTGT
GTCCTTGTGCAGTTGTGCCCCTTTGTACTACATATATTATCCTTTAGGCCCAACTCAATACATT
CATATGTTGCATTTTTCATCCTTTTGTGCATGAAACGTGTCCATATTTCCCTACTACAGTTTTT
GGACTGCGTATGTAAAAGAAACCATTCTAACTTATTTAAAGCCTTTTGGGTGTTTCAAAAAAGT
CTAACCTATACCTAGCTCTTAGCAGACTTTGGGGCAGTATAGTAGTATTTCATATGGAATGTAC
TGTTGAATTAACCTGTTCTCATGCAGGTTAGAGGAGAAGCTCGCTAATGTAGAATCTGAGAATA
AAGTCCTTCGTCAGCAAGCTGTCTCAATGGCTCCAAGTAAAATTTTGTCAGGCCGTTCCAAGTC
CATTTTACAGGTGAGAAAAATCAGCGTAAATGTTTTTATCTTTGGTTAATTCCCTCTTATGATA
CTTCGACAGTTTATACTGCTTCTTTATTTTCCAGAGGAATGCAGAAAGTGTTCATGTATCAAGC
GGCGATTCGAAAGCAGCCCCAGTGAGTAGACGCAATATATATTTGTTCAGCGGTTATATAATTT
GTAAAAGTAACATGTTTTTTTTAATTTGTTATTGTTTAAGGAGTCCAATAACATATCCTCTCCT
AAAAAGGAATTTGACTTCGATGATAAGCCACAGAAGTCACTTAATGAAAAGCAGCAGGTGTGTC
CGCTGTTTTGGTGTTTATTCTTAGATTACTTTGTAGATCCTTCATATTCATGTTACTCTCTGCA
ATTAACATTTTGATCTTTGCAGGAAAATCAAGATCTATTAATTAGGTGCATTGCTCAGCATTTG
GGCTTTGCTGGAAATCGGCCAGTCGCTGCTTGCATCATATACAAGTGCCTTCTTCACTGGAGAT
CATTTGAAGTAGAGAGGACAAGTGTTTTTGACCGCATTATTCAGACCATTGGTCATGCTATTGA
GGTTATAACCATACCCTACAACTCTGTTATCATTATCCAGAATTAATGATACTGACTTATCATT
TTATCTGTTTTACATAGACACAGGACAACAACGAAGTCTTAGCATATTGGCTCTCAAATGCTTC
AACACTTCTGCTGTTGCTTCAAAGGACACTGAAGGCAAGTGGATCAACAGGGATGGCTCCGCAG
CGACGGAGATCGTCATCCGCCACTCTTTTTGGAAGGATGACCCAGGTACTCACCGCATTTAAAT
CATCATTAGAAGAAGCTTTATAATAGTTACTGAATGACTGCAATTAATACATATTCTATTTCCA
GAGCTTCAGAGGAACTCCCCAAGGTGTGAATCTTTCTCTGATAAATGGGAGCATGGTTAGTGGA
GTAGAGACTCTACGACAAGTCGAAGCAAAGTATCCGGCGTTGTTGTTTAAGCAGCAACTTACGG
CGTATGTGGAAAAGATATATGGAATGATCCGGGACAATTTGAAGAAAGAGATCTCTCCTTTGCT
TGGTTTGTGCATTCAG
						
					

			
		

Sequences
Splice junction sequence	GTTTAAGCAGCAACTTACGGCGTATGTGGAAAAGATATATGGAATGATCCGGGACAATTTGAAG AAAGAGATCTCTCCTTTGCTTGGTTTGTGCATTCAGacctcactacaatcagaaaaacaaagag cggatgatttggaaaaaaaacgctctgaagaacaacaagcaaatgaagaaaaacaaaagaaaat ggaagaga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 918 Transcript exons: 16780846-16780985,16781320-16781431,16781520-16781570,16 781654-16781734,16781828-16781998,16782079-16782234,1678 2319-16782525 ACCTCACTACAATCAGAAAAACAAAGAGCGGATGATTTGGAAAAAAAACGCTCTGAAGAACAAC AAGCAAATGAAGAAAAACAAAAGAAAATGGAAGAGACTGATGTAAAAATGCGTCAATTCCAGGA ATATCTTAGAAGGTTAGAGGAGAAGCTCGCTAATGTAGAATCTGAGAATAAAGTCCTTCGTCAG CAAGCTGTCTCAATGGCTCCAAGTAAAATTTTGTCAGGCCGTTCCAAGTCCATTTTACAGAGGA ATGCAGAAAGTGTTCATGTATCAAGCGGCGATTCGAAAGCAGCCCCAGAGTCCAATAACATATC CTCTCCTAAAAAGGAATTTGACTTCGATGATAAGCCACAGAAGTCACTTAATGAAAAGCAGCAG GAAAATCAAGATCTATTAATTAGGTGCATTGCTCAGCATTTGGGCTTTGCTGGAAATCGGCCAG TCGCTGCTTGCATCATATACAAGTGCCTTCTTCACTGGAGATCATTTGAAGTAGAGAGGACAAG TGTTTTTGACCGCATTATTCAGACCATTGGTCATGCTATTGAGACACAGGACAACAACGAAGTC TTAGCATATTGGCTCTCAAATGCTTCAACACTTCTGCTGTTGCTTCAAAGGACACTGAAGGCAA GTGGATCAACAGGGATGGCTCCGCAGCGACGGAGATCGTCATCCGCCACTCTTTTTGGAAGGAT GACCCAGAGCTTCAGAGGAACTCCCCAAGGTGTGAATCTTTCTCTGATAAATGGGAGCATGGTT AGTGGAGTAGAGACTCTACGACAAGTCGAAGCAAAGTATCCGGCGTTGTTGTTTAAGCAGCAAC TTACGGCGTATGTGGAAAAGATATATGGAATGATCCGGGACAATTTGAAGAAAGAGATCTCTCC TTTGCTTGGTTTGTGCATTCAG
Genomic sequence	ACCTCACTACAATCAGAAAAACAAAGAGCGGATGATTTGGAAAAAAAACGCTCTGAAGAACAAC AAGCAAATGAAGAAAAACAAAAGAAAATGGAAGAGACTGATGTAAAAATGCGTCAATTCCAGGA ATATCTTAGAAGGTGAAGCTTTTCGCTGTTAATTATTCTATTTTCCTATTTTTATAGGGTTTGT GTCCTTGTGCAGTTGTGCCCCTTTGTACTACATATATTATCCTTTAGGCCCAACTCAATACATT CATATGTTGCATTTTTCATCCTTTTGTGCATGAAACGTGTCCATATTTCCCTACTACAGTTTTT GGACTGCGTATGTAAAAGAAACCATTCTAACTTATTTAAAGCCTTTTGGGTGTTTCAAAAAAGT CTAACCTATACCTAGCTCTTAGCAGACTTTGGGGCAGTATAGTAGTATTTCATATGGAATGTAC TGTTGAATTAACCTGTTCTCATGCAGGTTAGAGGAGAAGCTCGCTAATGTAGAATCTGAGAATA AAGTCCTTCGTCAGCAAGCTGTCTCAATGGCTCCAAGTAAAATTTTGTCAGGCCGTTCCAAGTC CATTTTACAGGTGAGAAAAATCAGCGTAAATGTTTTTATCTTTGGTTAATTCCCTCTTATGATA CTTCGACAGTTTATACTGCTTCTTTATTTTCCAGAGGAATGCAGAAAGTGTTCATGTATCAAGC GGCGATTCGAAAGCAGCCCCAGTGAGTAGACGCAATATATATTTGTTCAGCGGTTATATAATTT GTAAAAGTAACATGTTTTTTTTAATTTGTTATTGTTTAAGGAGTCCAATAACATATCCTCTCCT AAAAAGGAATTTGACTTCGATGATAAGCCACAGAAGTCACTTAATGAAAAGCAGCAGGTGTGTC CGCTGTTTTGGTGTTTATTCTTAGATTACTTTGTAGATCCTTCATATTCATGTTACTCTCTGCA ATTAACATTTTGATCTTTGCAGGAAAATCAAGATCTATTAATTAGGTGCATTGCTCAGCATTTG GGCTTTGCTGGAAATCGGCCAGTCGCTGCTTGCATCATATACAAGTGCCTTCTTCACTGGAGAT CATTTGAAGTAGAGAGGACAAGTGTTTTTGACCGCATTATTCAGACCATTGGTCATGCTATTGA GGTTATAACCATACCCTACAACTCTGTTATCATTATCCAGAATTAATGATACTGACTTATCATT TTATCTGTTTTACATAGACACAGGACAACAACGAAGTCTTAGCATATTGGCTCTCAAATGCTTC AACACTTCTGCTGTTGCTTCAAAGGACACTGAAGGCAAGTGGATCAACAGGGATGGCTCCGCAG CGACGGAGATCGTCATCCGCCACTCTTTTTGGAAGGATGACCCAGGTACTCACCGCATTTAAAT CATCATTAGAAGAAGCTTTATAATAGTTACTGAATGACTGCAATTAATACATATTCTATTTCCA GAGCTTCAGAGGAACTCCCCAAGGTGTGAATCTTTCTCTGATAAATGGGAGCATGGTTAGTGGA GTAGAGACTCTACGACAAGTCGAAGCAAAGTATCCGGCGTTGTTGTTTAAGCAGCAACTTACGG CGTATGTGGAAAAGATATATGGAATGATCCGGGACAATTTGAAGAAAGAGATCTCTCCTTTGCT TGGTTTGTGCATTCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_006758* 						
					
						PMCS
						0.489374841

Conservation Information
Conserved circRNAs	osi_circ_006758*
PMCS	0.489374841

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							16780937-16782522(+)
						
						Potential amino acid sequence
						
							MEETDVKMRQFQEYLRRLEEKLANVESENKVLRQQAVSMAPSKILSGRSKSILQRNAESVHVSS
GDSKAAPESNNISSPKKEFDFDDKPQKSLNEKQQENQDLLIRCIAQHLGFAGNRPVAACIIYKC
LLHWRSFEVERTSVFDRIIQTIGHAIETQDNNEVLAYWLSNASTLLLLLQRTLKASGSTGMAPQ
RRRSSSATLFGRMTQSFRGTPQGVNLSLINGSMVSGVETLRQVEAKYPALLFKQQLTAYVEKIY
GMIRDNLKKEISPLLGLCIQTSLQSEKQRADDLEKKRSEEQQANEEKQKKMEETDVKMRQFQEY
LRRLEEKLANVESENKVLRQQAVSMAPSKILSGRSKSILQRNAESVHVSSGDSKAAPESNNISS
PKKEFDFDDKPQKSLNEKQQENQDLLIRCIAQHLGFAGNRPVAACIIYKCLLHWRSFEVERTSV
FDRIIQTIGHAIETQDNNEVLAYWLSNASTLLLLLQRTLKASGSTGMAPQRRRSSSATLFGRMT
QSFRGTPQGVNLSLINGSMVSGVETLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPL
LGLCIQTSLQSEKQRADDLEKKRSEEQQANEEKQKKMEETDVKMRQFQEYLRRLEEKLANVESE
NKVLRQQAVSMAPSKILSGRSKSILQRNAESVHVSSGDSKAAPESNNISSPKKEFDFDDKPQKS
LNEKQQENQDLLIRCIAQHLGFAGNRPVAACIIYKCLLHWRSFEVERTSVFDRIIQTIGHAIET
QDNNEVLAYWLSNASTLLLLLQRTLKASGSTGMAPQRRRSSSATLFGRMTQSFRGTPQGVNLSL
INGSMVSGVETLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQTSLQSEKQ
RADDLEKKRSEEQQANEEKQKKMEETDVKMRQFQEYLRRLEEKLANVESENKVLRQQAVSMAPS
KILSGRSKSILQRNAESVHVSSGDSKAAPESNNISSPKKEFDFDDKPQKSLNEKQQENQDLLIR
CIAQHLGFAGNRPVAACIIYKCLLHWRSFEVERTSVFDRIIQTIGHAIETQDNNEVLAYWLSNA
STLLLLLQRTLKASGSTGMAPQRRRSSSATLFGRMTQSFRGTPQGVNLSLINGSMVSGVETLRQ
VEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQ(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	16780937-16782522(+)
Potential amino acid sequence	MEETDVKMRQFQEYLRRLEEKLANVESENKVLRQQAVSMAPSKILSGRSKSILQRNAESVHVSS GDSKAAPESNNISSPKKEFDFDDKPQKSLNEKQQENQDLLIRCIAQHLGFAGNRPVAACIIYKC LLHWRSFEVERTSVFDRIIQTIGHAIETQDNNEVLAYWLSNASTLLLLLQRTLKASGSTGMAPQ RRRSSSATLFGRMTQSFRGTPQGVNLSLINGSMVSGVETLRQVEAKYPALLFKQQLTAYVEKIY GMIRDNLKKEISPLLGLCIQTSLQSEKQRADDLEKKRSEEQQANEEKQKKMEETDVKMRQFQEY LRRLEEKLANVESENKVLRQQAVSMAPSKILSGRSKSILQRNAESVHVSSGDSKAAPESNNISS PKKEFDFDDKPQKSLNEKQQENQDLLIRCIAQHLGFAGNRPVAACIIYKCLLHWRSFEVERTSV FDRIIQTIGHAIETQDNNEVLAYWLSNASTLLLLLQRTLKASGSTGMAPQRRRSSSATLFGRMT QSFRGTPQGVNLSLINGSMVSGVETLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPL LGLCIQTSLQSEKQRADDLEKKRSEEQQANEEKQKKMEETDVKMRQFQEYLRRLEEKLANVESE NKVLRQQAVSMAPSKILSGRSKSILQRNAESVHVSSGDSKAAPESNNISSPKKEFDFDDKPQKS LNEKQQENQDLLIRCIAQHLGFAGNRPVAACIIYKCLLHWRSFEVERTSVFDRIIQTIGHAIET QDNNEVLAYWLSNASTLLLLLQRTLKASGSTGMAPQRRRSSSATLFGRMTQSFRGTPQGVNLSL INGSMVSGVETLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQTSLQSEKQ RADDLEKKRSEEQQANEEKQKKMEETDVKMRQFQEYLRRLEEKLANVESENKVLRQQAVSMAPS KILSGRSKSILQRNAESVHVSSGDSKAAPESNNISSPKKEFDFDDKPQKSLNEKQQENQDLLIR CIAQHLGFAGNRPVAACIIYKCLLHWRSFEVERTSVFDRIIQTIGHAIETQDNNEVLAYWLSNA STLLLLLQRTLKASGSTGMAPQRRRSSSATLFGRMTQSFRGTPQGVNLSLINGSMVSGVETLRQ VEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQ(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os06g0488200_circ_g.6

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