Detail information of Os05g0582400_circ_g.1


General Information
CircRNA Name Os05g0582400_circ_g.1
ID in PlantcircBase osa_circ_029105
Alias Os_ciR5486
Organism Oryza sativa
Position chr5: 28990999-28995504  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os05g0582400
Parent gene annotation Similar to Mitogen-activated protein kinase 9. (Os05t0582400-01)
Parent gene strand +
Alternative splicing Os05g0582450_circ_g.1 Os05g0582450_circ_g.2
Support reads 3
Tissues root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os05t0582400-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCGTTGCTGGATTGGCTCCTAATTATTTACCAGCCACCAGTAATAAACGGAGAAGTTTGCCT
GGAAGATGGTCAGATGGATGAGGACGACTATTAGAGagctctgcggaggagttttttacagagt
atggtgatgcgaaccggtacaggatccaagaagtcattggtaagggaagctatggggttgtgtg
ctctgcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGCTCTGCGGAGGAGTTTTTTACAGAGTATGGTGATGCGAACCGGTACAGGATCCAAGAAGTCA
TTGGTAAGGGAAGCTATGGGGTTGTGTGCTCTGCCATTGATTTGCACACTAGACAGAAGGTGGC
GATCAAGAAGGTGCACAATATTTTTGAGCATGTCTCGGATGCTGCGCGTATTCTCCGTGAGATC
AAGCTTCTGAGACTCCTAAGGCATCCGGACATTGTTGAGATCAAGCACATTATGCTACCTCCGT
CAAGAAGGGACTTCAAAGATATTTATGTTGTTTTTGAGCTTATGGAATCTGATCTCCACCAAGT
TATAAAGGCTAATGATGACTTAACAAAAGAGCACTACCAATTTTTCCTTTATCAATTACTCCGG
GCCCTCAAATACATTCATACTGGTAGGAAACATTAACTCCTTCAGCTCTAGTTCCATTTCCCCC
TTTTAGATAGTGTGCATCTGTAGTCTGTATATTAGTTACCCCCTTTGATCTCATTTCACAATGC
AGCATTCTGTGGTTAGTCTTATATGTATTGCATATTCATTGCATAGAGGGAAGTCACCTACTCA
TCATGCCCTTCAACCACTCTCCCCATGTGTTTGTGCTTCAGTATAATTATAAAAGAAAGTGAAG
TAATGGGGTAGTTATGGCTTCCTCGGTGACCATGTCTAGATAATCTACAGTGAATGTGAGAATA
TTTTTATTTACCAAAGGTTGCTTGGAGTGCAGTCAATCAAATGCAGATAATAAATCACCATATT
TTTGCAAACCAATTTAGCAGCAGGGGCTTTCCCCTTTATGATGTAAAACCAAGTTAACCAATGG
GTTTGTGTATGATTTCTGTAGATTATAATTTTACCTATTATTAATCTGGTTCCTTGCTTTGTGC
TAGCTGGTCCAACCATGATACCTGTTACTATCCCTCTATATTTTAATATGTCCACTTAACATAT
CCATTTACATATCAGTCTGCGTCCTTTTAGTTTGTTCAAACTAGTAGCTTTCTTTTAGCCCACA
CGCCTTCTAAAATTACCATGAAAGTAAATTATACTTAATTGTAACAGTCAAGGTATAAGACCTG
ACTGTAAGTTCATGGAAGCTTTGTGACTTATTTAGCACTCTTGTCATTTTCCTCATTACATTTA
TGTAGTATCTACTCTGATAAGGACACAGTCTGATTGCTTGAGGGGATTCTTGTCCAATAATTGT
CATAGGTATTGACTTGCCACTGGCCACTGCTAAAAACACATCAACCATGCCCTGTTGTTTTTCT
ACCTTATTGACACCCTGTGTAAAATCTTATGACTCAATTGCATATTATTCTTTTATTTTTCTAT
TGCCATAATGTGTGCTAACACTGAGTTTATATAACTGTAGCTAGTGTTTATCACCGTGATCTGA
AGCCCAAGAACATTTTAGCAAATTCTAACTGCAAACTGAAAATATGTGATTTCGGACTAGCACG
AGTTGCATTCAATGATACCCCAACAACTGTCTTCTGGACGGTATGTTAGTACGAAGCACAAACC
CAACACCAACTGATTTGGTTGAAGTACCACCATGATTTATGGACATAACACGTATGCTCTGCAG
GATTATGTAGCAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTCTTCTCAAAGGTGA
GCTTTGCAGTTCATGCATATGTTTATCCTGACAGAAATACAATGTGCTTGTTAGACTTGACGAT
GTCATATTATGTTTTATTTGGTATTTTCTCTTTTATATGTTTTTATAAAGCATATACAATTCAT
CTTTGTGTTTCTTTGATACTGTTTATCCATTTTTGCTAGATTTATATCCGTTCAATCTTGTTCT
GATATCATTTTTTTGTTCTGTTTTGTATTTTAATTCAAGGACTTATTATTATTTCCCATCAATT
CCATGTTTTACGCAAATATGGACCAATATCCTGCTGAATAGCAACGTTTACAACAATTCAGATT
ACTGTAAAAAAAAAGCAACTTAGAACAGTACAAGCTTTTTTAAAAAAAATTCACATGCCTGGTG
AACTAATGTGCTGCTTTTATGCTTATCATAATTTTTCAAGGGTGTGGTTATATGCAGCATCTTA
ATGTGTTTTGCATTATCATTTCACTGCAGTATACACCAGCTATTGACATTTGGAGCATTGGGTG
CATCTTTGCTGAGGTGTTGACAGGGAAGCCTTTGTTTCCTGGTAAAAATGTTGTCCATCAGTTA
GACTTGATGACTGATCTTCTAGGAACACCTTCCATGGATACAATTTCCCGGGTATGATAATACT
GTTAGGTAAAAGTTTTTTGTAGGTCCTCCTGGGAGGAGACTTCAGTGACCCCCAACATTTGTCT
TATTGTTCTCTTCCTTTCCAGGTTCGGAATGAGAAAGCAAGACGGTACTTGAGCAGCATGAGAA
AGAAAGATCCAGTCCCCTTCTCTCAAAAGTTTCCTAATGCAGATCCTTTGGCACTAAAACTCTT
GCAACGGTTATTAGCCTTTGATCCAAAGGACCGTCCAACTGCTGAAGAGGTAACTGTTTGGTGT
CTTTTGTCACTGTGATAAACTGATATGTCAATTTCTTTTATATGTTAAGATTTTGCTTGCAACT
TTAGTTTGGTATGTGAAGTATTTTGTATTGTTGTGGCATTCTCCTGATACTTAAAACTTGTCAG
GCATTGACTGATCCATACTTTAAAGGCCTTTCCAAGATTGATAGAGAACCATCATGCCAGCCAA
TCAGAAAACTGGAGTTTGAATTTGAGCAGAAAAAATTGTCTAAGGAAGATATAAGGGAGCTGAT
ATTCCAGGAGATATTGGAATATCATCCACAATTGCAGAAGAACTACAGAAATGGAAGAGAGAGA
GCAACCTTTCTCTACCCAAGGTTTTAGCTTTTCTGTATTTGCACACGTATGGTGCTTTTGCACA
TGCATGTACCATGTATTTATACGTTTCTTTTACTGTATCAAGTCTCATTGACGGTGATAACTTG
TCGTCATGATTATACAGTGCGGTTGATCAGTTTAAGAAGCAGTTCTCTAATCTTGAAGAAAGCA
ATGGAAGTGGCTCAGCAATTCCAATGGAAAGAAAACATGCATCGCTTCCTAGGTAATATGGCAT
CAAATTCTGATCTCGTGTTTTTTTTTTTTGAGGCGTGCTTTGAAGGTCATCTTAAGATTTCTCA
ATATCAAGGCAACCTTGGTGCCAAATGATGAAAGAAACATCTAGATCAGGCCAGGGGTTCCTTG
TCCAGATGGCAAACTGGGTTATATAAAACTTTGGACTGAAGTAACTGGGGCTCACATGAGTTCA
AAGAAAACAGCTGCTTTATTCCTGAAGTGTGTCAAAATCTTGTGCATGGTCTTGCACCAAGCAC
AGGGATGGAGATTTCTCTAGGAATTTGTGGTTCTGTCAATGTTGTAGAGTTGGCGCATATAACT
GCTATCTAGATGGCCAAATTCTCCGTTTGACTTGGTATATGATATGATGAAGAAAGGAACTCGC
ACGTTAGTTAGAGTCATGTTACAAAAGAATTTTGCAGTCTAGATATTTTGACATTAGACGAGAA
TTGATTAGCATGCATTCATAATGTTATACCCTTTGATTTAGTTAAACCTTGAGTTTTTTTGCTA
ATCTACAACTACATTTTGTAAGGTCTACTACTGTTCACTCTACTCCAATTCCTCCCAAGGAACA
ACCTCTTGCGGCCTCATTGAAGAGCAGCAGGCCTGTCTCTGATGAACCTTGTAAAAACCCCTGG
GTCATGGGAGGATTTTCTGGAAATATTCCCACTTCTTCTCAGGTTTCACAAGTGGCAAAACCAG
GTGCACTTGTGTTTCATTTATTAATACTAGTATATCTACATGTTCTGTTTATATTTCTAATATA
TTTCCTTCTTAACAGTGGCACCAGGGAGACCTGTTGGGTCAGTATTTCCTTATGAGACTGGAAG
CACCAATGATCCTTATGGTCCAAGGGGACCAGTGATGAGTTCAGGGTATCCTCCCCAGCAACAA
ATCTCACAAGCATATGGTTATCATCAAGTGCCTGCAAGGATGAACTGTGTTGAACAATCACAAG
CCATGGATGCTTATAAAATGCATTCACAGTCACAGACGCAGGCCTATGCTTATCCGAACAGCAA
AGTCACGGCTGATGTTGCTCTGGACATGAGAGGATCCACGTTCCATCATTCAGCAGGATCAAAG
AACGGCTCGTTAGATAGAATGGTAACACAGACTGACATATACACAAGATCTCTTAACGGTATTG
TTGCTGCCGCGACTTCGGCAGGCGTTGGTACTAACAGAAAGGTTGGTGCTGTACCCATCAGCAC
CTCAAGGATGTATTAGTAGTGGCTAACAGCCTAAATTGATTGGCATATATTGGATTTCGTTGCT
GGATTGGCTCCTAATTATTTACCAGCCACCAGTAATAAACGGAGAAGTTTGCCTGGAAGATGGT
CAGATGGATGAGGACGACTATTAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.241796897
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015