Detail information of AT2G14255_circ_g.5


General Information
CircRNA Name AT2G14255_circ_g.5
ID in PlantcircBase ath_circ_013320
Alias NA
Organism Arabidpsis thaliana
Position chr2: 6040098-6040196  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder, circRNA_finder
Parent gene AT2G14255
Parent gene annotation Probable protein S-acyltransferase 23
Parent gene strand +
Alternative splicing AT2G14255_circ_g.1 AT2G14255_circ_g.2 AT2G14255_circ_g.3 AT2G14255_circ_g.4 AT2G14255_circ_g.6
Support reads 2
Tissues inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G14255.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAACAGTTTGACCATCACTGCCCCTGGATTTCCAACTGTGTTGGTAAGataattagaccggtg
cgatctaagcactgccccacttgtaagcgctgcgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATAATTAGACCGGTGCGATCTAAGCACTGCCCCACTTGTAAGCGCTGCGTTGAACAGTTTGACC
ATCACTGCCCCTGGATTTCCAACTGTGTTGGTAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.531335189
Functional Information
Coding potential Y
Potential coding position 6040164-6040100(-)
Potential amino acid sequence MVKLFNAALTSGAVLRSHRSNYLTNTVGNPGAVMVKLFNAALTSGAVLRSHRSNYLTNTVGNPG
AVMVKLFNAALTSGAVLRSHRSNYLTNTVGNPGAVMVKLFNAALTSGAVLRSHRSNY(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017