Detail information of BGIOSGA009028_circ_g.1


General Information
CircRNA Name BGIOSGA009028_circ_g.1
ID in PlantcircBase osi_circ_004268
Alias 2:33007782|33008561
Organism Oryza sativa ssp. indica
Position chr2: 33007782-33008561  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA009028
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA009028_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA009028-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGATCATGACCAGACACTTCTAGGAGATGTTGCTGCTGCAAATATATCACATCGTGAATTTTA
CAATGTATGGCAAAGGTTTGGTGTTCTGCCGGAAAGgttctctgattcttgaaatgggtgcatt
atcacgtttgacgggtgattctagatatgaggctgcagctcttcgtgctcttcgtaagttgtgg
agcatgag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCTCTGATTCTTGAAATGGGTGCATTATCACGTTTGACGGGTGATTCTAGATATGAGGCTGC
AGCTCTTCGTGCTCTTCGTAAGTTGTGGAGCATGAGAAGTTCGCTAAATCTTGTAGGCACAACC
CTTGATGTCTTGACTGGCAAGTGGATTGAATATTCGTCAGGCATTGGTGCTGGTACTACTCTTT
ACATTTTCCCATGTGATTTACTGATCATGTGTTTGTATCCTGCGGTAAGCATCTTGTCACTGCA
CAACATACTTTTGAGACATAATAATGATTCATTTGTATCATGTTTGCAGGAGTTGATTCATTTT
ATGAGTATTTGATTAAAGCGTATGTTCTTTTCGGAAGCGAAGAATACTGGGATATGTTTCATTC
AGCTTACCTTGCAGTGCAGAAGTATTTCCGACATGGCCCATGGTGCACCCTTTTATTTTTCTTG
GCATTTCATCTCAGCTAACTGGCCTGTCACTGTGTTGTGATTGTACCAAGCACTAATGATCATC
TGGCATGATAGGTATCATGAGGCTGATATGAGGACCGGAGAAGCAACACACTGGCAACTAACTA
GCCTTCAAGCCTTCTGGCCAGGTCTTCAGGTTTGCTGAATTCCATAAATTGATGGACAGTCACC
TTATTGCAGGATGTTAATCATGCATTGTTTATCTACTCCTGTGATCATGACCAGACACTTCTAG
GAGATGTTGCTGCTGCAAATATATCACATCGTGAATTTTACAATGTATGGCAAAGGTTTGGTGT
TCTGCCGGAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 33007955-33008511(-)
33007810-33008525(-)
33008490-33007794(+)
33007800-33007794(+)
Potential amino acid sequence MPDEYSIHLPVKTSRVVPTRFSELLMLHNLRRARRAAASYLESPVKRDNAPISRIREPFRQNTK
PLPYIVKFTM*(-)
MHPFQESENLSGRTPNLCHTL*(-)
MLLLQIYHIVNFTMYGKGLVFCRKGSLILEMGALSRLTGDSRYEAAALRALRKLWSMRSSLNLV
GTTLDVLTGKWIEYSSGIGAGVDSFYEYLIKAYVLFGSEEYWDMFHSAYLAVQKYFRHGPWYHE
ADMRTGEATHWQLTSLQAFWPGLQTLLGDVAAANISHREFYNVWQRFGVLPERFSDS*(+)
MGALSRLTGDSRYEAAALRALRKLWSMRSSLNLVGTTLDVLTGKWIEYSSGIGAGVDSFYEYLI
KAYVLFGSEEYWDMFHSAYLAVQKYFRHGPWYHEADMRTGEATHWQLTSLQAFWPGLQTLLGDV
AAANISHREFYNVWQRFGVLPERFSDS*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021