Detail information of Zm00001d013274_circ_g.1


General Information
CircRNA Name Zm00001d013274_circ_g.1
ID in PlantcircBase zma_circ_008375
Alias zma_circ_0002174
Organism Zea mays
Position chr5: 7550033-7553301  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d013274
Parent gene annotation Probable helicase MAGATAMA 3
Parent gene strand -
Alternative splicing Zm00001d013274_circ_ag.1 Zm00001d013274_circ_ag.2 Zm00001d013274_circ_g.3
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d013274_T064:9
Zm00001d013274_T004:10
Zm00001d013274_T060:10
Zm00001d013274_T052:10
Zm00001d013274_T044:9
Zm00001d013274_T013:11
Zm00001d013274_T072:9
Zm00001d013274_T023:12
Zm00001d013274_T049:11
Zm00001d013274_T038:11
Zm00001d013274_T003:11
Zm00001d013274_T050:8
Zm00001d013274_T040:11
Zm00001d013274_T015:8
Zm00001d013274_T063:9
Zm00001d013274_T037:8
Zm00001d013274_T081:2
Zm00001d013274_T080:9
Zm00001d013274_T007:11
Zm00001d013274_T073:10
Zm00001d013274_T036:10
Zm00001d013274_T076:8
Zm00001d013274_T033:11
Zm00001d013274_T021:11
Zm00001d013274_T014:8
Zm00001d013274_T045:1
Zm00001d013274_T048:10
Zm00001d013274_T032:10
Zm00001d013274_T011:10
Zm00001d013274_T034:9
Zm00001d013274_T070:11
Zm00001d013274_T053:8
Zm00001d013274_T016:11
Zm00001d013274_T078:11
Zm00001d013274_T039:7
Zm00001d013274_T075:9
Zm00001d013274_T025:10
Zm00001d013274_T061:10
Zm00001d013274_T012:11
Zm00001d013274_T057:10
Zm00001d013274_T024:9
Zm00001d013274_T046:11
Zm00001d013274_T065:8
Zm00001d013274_T068:11
Zm00001d013274_T009:11
Zm00001d013274_T066:11
Zm00001d013274_T006:11
Zm00001d013274_T020:11
Zm00001d013274_T074:11
Zm00001d013274_T028:11
Zm00001d013274_T041:10
Zm00001d013274_T001:9
Zm00001d013274_T042:11
Zm00001d013274_T043:11
Zm00001d013274_T069:1
Zm00001d013274_T079:10
Zm00001d013274_T059:11
Zm00001d013274_T022:10
Zm00001d013274_T026:9
Zm00001d013274_T054:9
Zm00001d013274_T035:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAATAAATATATTAGAAACTAATTAGGAGGTCTGCAATCTTAACATACTTGCCATCAATGTCC
AGTTCTGGCCCATGTTTTAGAACATCAAATCCTCCTcagtacagcagattttgctcttgtaatg
gcaacattcattcgtcgaaaatcagaaacaaagccaatcttttgttccttattgcatcttacac
atgaaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGTACAGCAGATTTTGCTCTTGTAATGGCAACATTCATTCGTCGAAAATCAGAAACAAAGCCA
ATCTTTTGTTCCTTATTGCATCTTACACATGAAAAAATGACTATTTCTTTTTCACGTCCCTACA
TACAAGCAATGGGACATAACATCATATCATAGTGCTCACAAAAAGAGCGAGAAAGAGATGTAAC
ATCACAATCACTGGTACTTGCAATTGCAAAAATATTGAGGCATAGAGATTATTTGTACAGAAAT
CTCAAAATGCATTTGAACCAGTACCTGGAATCCATCAACTGTGCTTACATCTATCAATTCCCTT
GATTGATCCCCAAAGGTTGATCGAAAACTGTCCTTCAATAGTTTTACTTGATGCCTGTATGGTG
ATATAACACCCACTTCAGGACTAGATTTGAGCTCTGGATAGCGCAATGCCAATTGGTGGTACAG
GAGAGTTATGAATTCCACTTCATCCTGGTTTACCCAAGAACCACTTCCAGATGGTTGGGATTCA
ATGCCATCAACGTCAAAGAAACAAAATGGTCCGAAGCAGCTGTAGGAATGCCATGGACGTTTCC
TGCTCAGGCCCTCCCCATCTTGTAGTACCCCTTCATAAAATTCTTTTGAAGGGAATGTACTAAT
CTGCATAGGAATGGATAATGAATTACACCAAGCATTCCAGTTTCCAGCTTCAGATATGCTGAGG
ATAAAAGATTCACCTCTGGATGCATGCGATATTGGATTTTAAGCATTTGCACTGGAAAACCGGC
AGCTTGAAATCTTTTGAACAAGCTCGTTCCATATCTAAGAGATAAATGAGCATTGTCTTAGCAT
ATTACAGCACCTGGAAACTGTGCACCGGTATAGAAAGATCATCTTACCCCAACTTCTGTGCAGT
CTGTGAAATGACAGTTGCAGGCAACTGAACTGGGTCACCAACCTGATAGGGATATTATAAGTCG
TTATTACCAAAAGCTAAAGTGATTCTGTTCATGTGCACAGATTAACCTGACGCCCCGTTTGGAT
CACTCGAATTGAATTCCATTCTAATAATATTAATTTAGGTATATATCAATTAAGCTAATTCACT
TTTATACAAAATATATTTGTATACTGTTATTAGCAAGATGTCTTAGATATTTATGTGCTACATT
TTTACTATAAAGGAGTAGAACGAAGAGTATCATGTAAGTTATAGATTAGAAACAAATTCTAATC
ATGCATAAAATTATTTCCTATCCTCCACCCTATGAATTTGAGATAGGCTTATATCTGAACTTTA
GAAAGTGGTGGAATGCCAAATTCCAAACTAAATAAGTTATTTTATTGAGTGAATTCCAATTCCT
TTGAAATGAAGGGATCCAAACGCCCCGTGATAGGAATATTATGAGGTACAGTCAAGAGAGATGG
TGAGACTGCATAAACATGCACACCAAGAAATGAAAGTATACTTCTAACATAAGCCCAGATAGAC
AAGTGCTACTATAAGTACTGCAAATCTACAGCCCAGAGAAGAGGAAATATTCAAAATATTGCCT
GGCCTGACCTCTGTCACATAACAATGTACTATAATCGACAAATAACGTACATCTTGCAGAAGGG
AAAGCAAGATACTTAAATAAAATTCAAAACAAAACAGTACACAAAAAATGAGAAAAATAGCCAA
CATACAAGAAAAATTTGTCTGCAGCCATGGATCAAAGGAATAAGAGTTGCAGGTTCCACCTGAA
AAGAAGAGGATAAGTCTACGCTTTTATGAACTTAATTAAACAGAGGCACATAAAATTCTATTAT
CCAAATTGATAACATCAATGGTCCATGATGAAAGCAATGTTTAAAAGTTTCCTCACCGCTTGTG
CAGCTTCATCAATTATAACAACATCAAAAGCACGGGTCATCCTGCTAAAAATTGATGATCCACT
GAAACTCAGAGTAGAAAATACCTGCAAATTTTACTTGGCAGTGAGAATACTGTAATAGGTATAA
TCAATGAACATTTATAATTAATAAGAAGATGTACAATGGCTGCTTCGTCCAGTATTGAAGCTCT
AATCCGATCATATTCACCAGCACCTCGTCTCCCACCATCTAATGTGCGATCTACACCAGAAAGT
TTTTGTTGAATCTGCAAGGTTGAAATCATTGTAGTTGACAGAATTTATACAGAAAATGTATCGC
AACTTTATGCCACTTACAAGATAATCCATAGAAACTGCTTTAACAGAATGAAGGGCCTTCACTC
CAATGCGCACAATTTTAGGGTTATAAGTGTTGTTATTTTCATCTCGAATTCCTGAAACAAAAAA
AACATCACTTAATTACTTAATCTGTGCATGATGCTTCCTAACGATAGCATTAGTCTAAAAACTT
ATGAGTGCACTGTGCACCAAATGCACAAAAAAGGAAAAGAGAGAAGGGACATGGGAGCATTGTG
TCTACTGGATATTTAGCACAGAAAACCTTTACCTGTCTTAAGAACACGCAACACGATCTCATCG
AGTGCTGAGTTGGATGGAGCACACACCAACACATGAGCCCGATACTTGCGATTGGAACTTACGA
TTTCGGGTTTCTATAAAGATTTTTTTCTTTTCCATGTAAGGGGTAAATAGTCCAAGAACCTGGG
TAAATTTTAGCAAGTATACCAATATAGAAGAGTACCAGTTCATTTCCCGTTGGGTAAAATCCAT
CATCACCATCAACAGGCATAATCAGATCTCGAGGATTTGCACCAAGTAACCAAGGAGATGCCTT
TATCCAGTGTGCACGCCTGTCATGTGAACTCCCCAGTTATTGGTGCCAACAGAAATTTGCAGGT
GCATAGTGTTTGTGAAACTAGAATCAGCAATCCATTGAGATAACATAAAATTATTAGCAGTTCC
ACTTCCCAAACAGAAAAACTAGAAAATAAAAACGCCTAAAAATATGATAGCATAAACATCCTCC
CACCACTCCTAGTTTGTTTGGACGATTTGAGATATCAAAGGAACAAAAGCAATGTCAGAACTAA
GGTATTTTATTTGTCTAGCAATAACAAACACATAACCACGCAGATCTGTAAGAGAAACCAGTTA
AGTATGGAGCATTTCAAAGGGAAACTCATAATTTCAAGCAGCTAGATGTTATTAATCAGCTTTA
TAACCTTCCCATTTTCCATACCCAGCCCAAAGTCAAATAAATATATTAGAAACTAATTAGGAGG
TCTGCAATCTTAACATACTTGCCATCAATGTCCAGTTCTGGCCCATGTTTTAGAACATCAAATC
CTCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.052468028
Functional Information
Coding potential Y
Potential coding position 7553261-7550125(+)
7552779-7550355(+)
7552741-7553292(-)
Potential amino acid sequence MSSSGPCFRTSNPPQYSRFCSCNGNIHSSKIRNKANLLFLIASYT*(+)
MPLSSVHACHQCPVLAHVLEHQILLSTADFALVMATFIRRKSETKPIFCSLLHLTHEKMTISFS
RPWNPSTVLTSINSLD*(+)
MPVDGDDGFYPTGNELKPEIVSSNRKYRAHVLVCAPSNSALDEIVLRVLKTGIRDENNNTYNPK
IVRIGVKALHSVKAVSMDYLIQQKLSGVDRTLDGGRRGAGEYDRIRASILDEAAIVFSTLSFSG
SSIFSRMTRAFDVVIIDEAAQAVEPATLIPLIHGCRQIFLVGDPVQLPATVISQTAQKLGYGTS
LFKRFQAAGFPVQMLKIQYRMHPEISTFPSKEFYEGVLQDGEGLSRKRPWHSYSCFGPFCFFDV
DGIESQPSGSGSWVNQDEVEFITLLYHQLALRYPELKSSPEVGVISPYRHQVKLLKDSFRSTFG
DQSRELIDVSTVDGFQGREKEIVIFSCVRCNKEQKIGFVSDFRRMNVAITRAKSAVLRRI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b