Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d013274_circ_g.1 |
ID in PlantcircBase | zma_circ_008375 |
Alias | zma_circ_0002174 |
Organism | Zea mays |
Position | chr5: 7550033-7553301 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d013274 |
Parent gene annotation |
Probable helicase MAGATAMA 3 |
Parent gene strand | - |
Alternative splicing | Zm00001d013274_circ_ag.1 Zm00001d013274_circ_ag.2 Zm00001d013274_circ_g.3 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d013274_T064:9 Zm00001d013274_T004:10 Zm00001d013274_T060:10 Zm00001d013274_T052:10 Zm00001d013274_T044:9 Zm00001d013274_T013:11 Zm00001d013274_T072:9 Zm00001d013274_T023:12 Zm00001d013274_T049:11 Zm00001d013274_T038:11 Zm00001d013274_T003:11 Zm00001d013274_T050:8 Zm00001d013274_T040:11 Zm00001d013274_T015:8 Zm00001d013274_T063:9 Zm00001d013274_T037:8 Zm00001d013274_T081:2 Zm00001d013274_T080:9 Zm00001d013274_T007:11 Zm00001d013274_T073:10 Zm00001d013274_T036:10 Zm00001d013274_T076:8 Zm00001d013274_T033:11 Zm00001d013274_T021:11 Zm00001d013274_T014:8 Zm00001d013274_T045:1 Zm00001d013274_T048:10 Zm00001d013274_T032:10 Zm00001d013274_T011:10 Zm00001d013274_T034:9 Zm00001d013274_T070:11 Zm00001d013274_T053:8 Zm00001d013274_T016:11 Zm00001d013274_T078:11 Zm00001d013274_T039:7 Zm00001d013274_T075:9 Zm00001d013274_T025:10 Zm00001d013274_T061:10 Zm00001d013274_T012:11 Zm00001d013274_T057:10 Zm00001d013274_T024:9 Zm00001d013274_T046:11 Zm00001d013274_T065:8 Zm00001d013274_T068:11 Zm00001d013274_T009:11 Zm00001d013274_T066:11 Zm00001d013274_T006:11 Zm00001d013274_T020:11 Zm00001d013274_T074:11 Zm00001d013274_T028:11 Zm00001d013274_T041:10 Zm00001d013274_T001:9 Zm00001d013274_T042:11 Zm00001d013274_T043:11 Zm00001d013274_T069:1 Zm00001d013274_T079:10 Zm00001d013274_T059:11 Zm00001d013274_T022:10 Zm00001d013274_T026:9 Zm00001d013274_T054:9 Zm00001d013274_T035:10 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.052468028 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
7553261-7550125(+) 7552779-7550355(+) 7552741-7553292(-) |
Potential amino acid sequence |
MSSSGPCFRTSNPPQYSRFCSCNGNIHSSKIRNKANLLFLIASYT*(+) MPLSSVHACHQCPVLAHVLEHQILLSTADFALVMATFIRRKSETKPIFCSLLHLTHEKMTISFS RPWNPSTVLTSINSLD*(+) MPVDGDDGFYPTGNELKPEIVSSNRKYRAHVLVCAPSNSALDEIVLRVLKTGIRDENNNTYNPK IVRIGVKALHSVKAVSMDYLIQQKLSGVDRTLDGGRRGAGEYDRIRASILDEAAIVFSTLSFSG SSIFSRMTRAFDVVIIDEAAQAVEPATLIPLIHGCRQIFLVGDPVQLPATVISQTAQKLGYGTS LFKRFQAAGFPVQMLKIQYRMHPEISTFPSKEFYEGVLQDGEGLSRKRPWHSYSCFGPFCFFDV DGIESQPSGSGSWVNQDEVEFITLLYHQLALRYPELKSSPEVGVISPYRHQVKLLKDSFRSTFG DQSRELIDVSTVDGFQGREKEIVIFSCVRCNKEQKIGFVSDFRRMNVAITRAKSAVLRRI*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |