Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d013274_circ_g.1 |
| ID in PlantcircBase | zma_circ_008375 |
| Alias | zma_circ_0002174 |
| Organism | Zea mays |
| Position | chr5: 7550033-7553301 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d013274 |
| Parent gene annotation |
Probable helicase MAGATAMA 3 |
| Parent gene strand | - |
| Alternative splicing | Zm00001d013274_circ_ag.1 Zm00001d013274_circ_ag.2 Zm00001d013274_circ_g.3 |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Zm00001d013274_T064:9 Zm00001d013274_T004:10 Zm00001d013274_T060:10 Zm00001d013274_T052:10 Zm00001d013274_T044:9 Zm00001d013274_T013:11 Zm00001d013274_T072:9 Zm00001d013274_T023:12 Zm00001d013274_T049:11 Zm00001d013274_T038:11 Zm00001d013274_T003:11 Zm00001d013274_T050:8 Zm00001d013274_T040:11 Zm00001d013274_T015:8 Zm00001d013274_T063:9 Zm00001d013274_T037:8 Zm00001d013274_T081:2 Zm00001d013274_T080:9 Zm00001d013274_T007:11 Zm00001d013274_T073:10 Zm00001d013274_T036:10 Zm00001d013274_T076:8 Zm00001d013274_T033:11 Zm00001d013274_T021:11 Zm00001d013274_T014:8 Zm00001d013274_T045:1 Zm00001d013274_T048:10 Zm00001d013274_T032:10 Zm00001d013274_T011:10 Zm00001d013274_T034:9 Zm00001d013274_T070:11 Zm00001d013274_T053:8 Zm00001d013274_T016:11 Zm00001d013274_T078:11 Zm00001d013274_T039:7 Zm00001d013274_T075:9 Zm00001d013274_T025:10 Zm00001d013274_T061:10 Zm00001d013274_T012:11 Zm00001d013274_T057:10 Zm00001d013274_T024:9 Zm00001d013274_T046:11 Zm00001d013274_T065:8 Zm00001d013274_T068:11 Zm00001d013274_T009:11 Zm00001d013274_T066:11 Zm00001d013274_T006:11 Zm00001d013274_T020:11 Zm00001d013274_T074:11 Zm00001d013274_T028:11 Zm00001d013274_T041:10 Zm00001d013274_T001:9 Zm00001d013274_T042:11 Zm00001d013274_T043:11 Zm00001d013274_T069:1 Zm00001d013274_T079:10 Zm00001d013274_T059:11 Zm00001d013274_T022:10 Zm00001d013274_T026:9 Zm00001d013274_T054:9 Zm00001d013274_T035:10 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.052468028 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
7553261-7550125(+) 7552779-7550355(+) 7552741-7553292(-) |
| Potential amino acid sequence |
MSSSGPCFRTSNPPQYSRFCSCNGNIHSSKIRNKANLLFLIASYT*(+) MPLSSVHACHQCPVLAHVLEHQILLSTADFALVMATFIRRKSETKPIFCSLLHLTHEKMTISFS RPWNPSTVLTSINSLD*(+) MPVDGDDGFYPTGNELKPEIVSSNRKYRAHVLVCAPSNSALDEIVLRVLKTGIRDENNNTYNPK IVRIGVKALHSVKAVSMDYLIQQKLSGVDRTLDGGRRGAGEYDRIRASILDEAAIVFSTLSFSG SSIFSRMTRAFDVVIIDEAAQAVEPATLIPLIHGCRQIFLVGDPVQLPATVISQTAQKLGYGTS LFKRFQAAGFPVQMLKIQYRMHPEISTFPSKEFYEGVLQDGEGLSRKRPWHSYSCFGPFCFFDV DGIESQPSGSGSWVNQDEVEFITLLYHQLALRYPELKSSPEVGVISPYRHQVKLLKDSFRSTFG DQSRELIDVSTVDGFQGREKEIVIFSCVRCNKEQKIGFVSDFRRMNVAITRAKSAVLRRI*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |