Detail information of AT2G39990_circ_g.4


General Information
CircRNA Name AT2G39990_circ_g.4
ID in PlantcircBase ath_circ_017577
Alias AT2G39990_C1
Organism Arabidpsis thaliana
Position chr2: 16699042-16699499  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, CIRI2
Parent gene AT2G39990
Parent gene annotation Eukaryotic translation initiation factor 3 subunit F
Parent gene strand -
Alternative splicing AT2G39990_circ_g.5
Support reads 3
Tissues seedlings, leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G39990.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGTGGGAAACGAGAAGTACCAGCCGACAATAGTTTCCTTTGAATTCACCTTAAGGTGTGAAGC
TAACATATTGTGGTGGTAATCAATATCCACAGCAACatccgactctctcagcatcaaccatgcg
gagatcaacaggaatctcttgaaaatgtgcaacgagttgtcgatcaccgagtgagaggtttgaa
gagacaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 310
Transcript exons: 16699042-16699271,16699420-16699499
ATCCGACTCTCTCAGCATCAACCATGCGGAGATCAACAGGAATCTCTTGAAAATGTGCAACGAG
TTGTCGATCACCGAGTGAGAGGTTTGAAGAGACAAAAGCTTTGATAGTACCCTCACCATTAGTA
AACCCAGTATCCACAGTTAGGTGAATTGGGTTGGGTACTTCTCTAGCATAGAAATCATGAATCA
GCGAACTACCGCCATTAACCCCAGCACCAGTTGAATACCAGCCGACAATAGTTTCCTTTGAATT
CACCTTAAGGTGTGAAGCTAACATATTGTGGTGGTAATCAATATCCACAGCAAC

Genomic sequence ATCCGACTCTCTCAGCATCAACCATGCGGAGATCAACAGGAATCTCTTGAAAATGTGCAACGAG
TTGTCGATCACCGAGTGAGAGGTTTGAAGAGACAAAAGCTTTGATAGTACCCTCACCATTAGTA
AACCCAGTATCCACAGTTAGGTGAATTGGGTTGGGTACTTCTCTAGCATAGAAATCATGAATCA
GCGAACTACCGCCATTAACCCCAGCACCAGTTGAATACCTGCAAATCAATAAACTTGTTCAATC
AACTATTCCAAAATGAGAAACTACCTAATGCAGTGTTCCAACACAGCTACAAGAATCATGTGAC
AAAGATATGAGACTAATCATGAGAGTATAAGAGAATAAGAGTGGGAAACGAGAAGTACCAGCCG
ACAATAGTTTCCTTTGAATTCACCTTAAGGTGTGAAGCTAACATATTGTGGTGGTAATCAATAT
CCACAGCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.400120299
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress
Other Information
References Pan et al., 2017;Zhang et al., 2019