Detail information of Os04g0485200_circ_g.2


General Information
CircRNA Name Os04g0485200_circ_g.2
ID in PlantcircBase osa_circ_024258
Alias NA
Organism Oryza sativa
Position chr4: 24254952-24256452  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0485200
Parent gene annotation UBX domain containing protein. (Os04t0485200-01)
Parent gene strand +
Alternative splicing Os04g0479800_circ_igg.1 Os04g0480100_circ_g.1 Os04g0480100_circ_g.2 Os04g0480100_circ_g.3 Os04g0480100_circ_g.4 Os04g0480300_circ_g.1 Os04g0480400_circ_g.1 Os04g0480400_circ_g.2 Os04g0480700_circ_g.1 Os04g0480900_circ_g.1 Os04g0480900_circ_ag.1 Os04g0480900_circ_ag.2 Os04g0481000_circ_ig.1 Os04g0481100_circ_g.1 Os04g0481100_circ_g.2 Os04g0481100_circ_g.3 Os04g0481300_circ_g.1 Os04g0481400_circ_g.1 EPlOSAG00000043923_circ_ig.1 Os04g0482300_circ_g.1 Os04g0482700_circ_g.1 Os04g0482800_circ_g.1 Os04g0482800_circ_g.2 Os04g0482800_circ_g.3 Os04g0483200_circ_g.1 Os04g0483550_circ_g.1 Os04g0483600_circ_g.1 Os04g0483600_circ_g.2 Os04g0483600_circ_g.3 Os04g0483600_circ_g.4 Os04g0484800_circ_g.1 Os04g0484800_circ_g.2 Os04g0484800_circ_g.3 Os04g0484900_circ_g.1 Os04g0485000_circ_g.1 Os04g0485000_circ_g.2 Os04g0485100_circ_g.1 Os04g0485100_circ_g.2 Os04g0485200_circ_g.1 Os04g0485300_circ_g.1 Os04g0485300_circ_g.2 Os04g0485300_circ_g.3 Os04g0485300_circ_g.4 Os04g0485300_circ_g.5 Os04g0485300_circ_g.6 Os04g0485300_circ_g.7 Os04g0485300_circ_g.8 Os04g0485300_circ_g.9 Os04g0485300_circ_g.10 Os04g0485300_circ_g.11 Os04g0485300_circ_g.12 Os04g0485300_circ_g.13 Os04g0485300_circ_g.14 Os04g0485300_circ_g.15 Os04g0485300_circ_g.16 Os04g0485601_circ_ig.1 Os04g0485800_circ_g.1 Os04g0486500_circ_g.1 Os04g0486500_circ_g.2 Os04g0486500_circ_g.3 Os04g0486500_circ_g.4 Os04g0486600_circ_g.1 Os04g0486600_circ_g.2 Os04g0486600_circ_g.3 Os04g0486600_circ_g.4 Os04g0486600_circ_g.5 Os04g0486600_circ_g.6 Os04g0486600_circ_g.7 Os04g0486600_circ_g.8 Os04g0486600_circ_g.9 Os04g0486600_circ_g.10 Os04g0486600_circ_g.11 Os04g0486900_circ_g.1 Os04g0486900_circ_g.2 Os04g0486950_circ_g.1 Os04g0487000_circ_g.1 Os04g0487100_circ_g.1 Os04g0487100_circ_g.2 Os04g0487100_circ_g.3 Os04g0487200_circ_g.1 Os04g0488000_circ_g.1 Os04g0488000_circ_g.2 Os04g0488050_circ_g.1 Os04g0488050_circ_g.2 Os04g0488050_circ_g.3 Os04g0488050_circ_g.4 Os04g0488050_circ_g.5 Os04g0488050_circ_g.6 Os04g0488050_circ_g.7 Os04g0488000_circ_g.8 Os04g0488100_circ_g.1
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0485200-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTACTATGAACTCTTCTTCTGCTCATCAATCTGATGTGTCTCAATCAGATTTTGCACCGCCAGC
AAACAAGAAACCAGCTAAACCAAAGTGGTTCAAAAGaacaatcgaaagttttgaagactcgtaa
aatgcgtgaagcagaacttgctgcccaacgagcaaagataaaaaaggtaagatataattcacac
tgctcttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AACAATCGAAAGTTTTGAAGACTCGTAAAATGCGTGAAGCAGAACTTGCTGCCCAACGAGCAAA
GATAAAAAAGGTAAGATATAATTCACACTGCTCTTCTCTGTATTTAGTGTTTCTTTCTGAATCT
AATTTGGTATAATATCTATTTTTCCACAACCTTCTTAACTGTAGGCAGTAATGAGGGTGCGATT
CCCTGATGGATACATACTTGAGGCCGATTTTCATCCGTCAGAAACAGTTCAAAGTCTGATGGAT
TTTCTGAAGAAAGTAATCTCTAGACCAGACCTGCCATTCTATCTCTGTAAGTCCACTTGCTTGG
GAGTTACTGATGTATTAGCTTCAACAGTAGGGTTTCACCTCCTCTTTGCCCCCTTAATTACCCA
CCTTTGTTTATCCTATCAACAACGATCTCGGCTTACAGTTAGTGTAATTTCATCTGTTTCAGTT
TACAGTTAGCTTTGGTTTTCATAAAGACTAATGAGAATACTTGTATCTATGATAAGAACTATTT
ATCTGTTTCATTTGCAATCAAATATGTTGGCAATCATGATATCGGAAATAACTAACCTCCCTTA
AGTAGTTCCATCATTATAGTTACATGCGAGTAAAATTTAAGTGCATCCTTTTGTGTAAAGGGTT
TTACAATCAACCACCTTTTACAGAGTAATACAAGTTAATAAGCAAAATTGGGTACAACATTCAG
AACACCTATTTGATGAGTTCATATGACAACATGACAGTAGCTCAAACAGGACAAGTTTTCTCAT
CGTGTTCTCGTTGCCCAAACTTGGATTAGACACTATCTGTTGTTATGTCAAAGGAATATCGTCA
GTCACCAAGTTGATTCTGTCTGGTGATAGCTTTGACAAATGTTTGAGTTAAAATATGCCACATG
TAACCTGTATGTGAAAACATAGCTTTAGGTTTAACTTCTACAGTTTTTTGGGTAAGCATCATAT
TCATCTGTCATTCTTTGAGCACAGATCATTTGAGTGACATCTCCATAGATTCTCTGCATTCATA
TCATAGAGATGTACCAGTTATAATTTCGTAATACTCCATCATTTGATTCCACTACAGATACAGT
TCCACCAAAGAAGCGGATAAAAGACACTTCACTGGATTTCTACACAATTGGTTTTGTTCCTGGG
GCTAATGTCTACTTCTCTTATGATCTGCCGGAAGGTATGTTTGTCCTAAATAAGTAATAACTAG
TACCAGGTTTTGTTCCTGGGGAACTCATTAGACATTCCCATTCGTTTTTGTTTTTTTTATTGAA
TCACATGCAGGCTCAGAGTTAAATACAGACAGTGTAAAATCAGGACCTTATCTCCGTGAAGAAA
TTCGGATGTTGGATGGACTACCAATTGTCCAAGAACCTGTGCACCAACCAATTGATTCTACTAT
GAACTCTTCTTCTGCTCATCAATCTGATGTGTCTCAATCAGATTTTGCACCGCCAGCAAACAAG
AAACCAGCTAAACCAAAGTGGTTCAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.111408877
Functional Information
Coding potential Y
Potential coding position 24256387-24254976(+)
24254982-24254976(+)
24255160-24256399(-)
24255179-24256448(-)
Potential amino acid sequence MCLNQILHRQQTRNQLNQSGSKEQSKVLKTRKMREAELAAQRAKIKKAVMRVRFPDGYILEADF
HPSETVQSLMDFLKKVISRPDLPFYLYTVPPKKRIKDTSLDFYTIGFVPGANVYFSYDLPEGSE
LNTDSVKSGPYLREEIRMLDGLPIVQEPVHQPIDSTMNSSSAHQSDVSQSDFAPPANKKPAKPK
WFKRTIESFEDS*(+)
MREAELAAQRAKIKKAVMRVRFPDGYILEADFHPSETVQSLMDFLKKVISRPDLPFYLYTVPPK
KRIKDTSLDFYTIGFVPGANVYFSYDLPEGSELNTDSVKSGPYLREEIRMLDGLPIVQEPVHQP
IDSTMNSSSAHQSDVSQSDFAPPANKKPAKPKWFKRTIESFEDS*(+)
MYPSGNRTLITAFFIFARWAASSASRILRVFKTFDCSFEPLWFSWFLVCWRCKI*(-)
MKIGLKYVSIRESHPHYCLFYLCSLGSKFCFTHFTSLQNFRLFF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017