Detail information of BGIOSGA024879_circ_igg.1


General Information
CircRNA Name BGIOSGA024879_circ_igg.1
ID in PlantcircBase osi_circ_017089
Alias Chr07:1609174_1614018(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr7: 1657782-1662626  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA024879_circ_igg.2 BGIOSGA024879_circ_igg.3 BGIOSGA024879_circ_igg.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCACGGTGGATGACAACCTTGTCCCACTTCTCATGGAGGTAGAATAAGCCAGAAGCCACGTCTT
TGATGATTTGCATCCTCTGAGCCCAATTTAAAACAGgaggactggaactcgtcatatctcgaca
agtgcaagcagatcttatggtaacttatccgttctttgttttgtaggatctaatgtttgttctg
acctgata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGGACTGGAACTCGTCATATCTCGACAAGTGCAAGCAGATCTTATGGTAACTTATCCGTTCTT
TGTTTTGTAGGATCTAATGTTTGTTCTGACCTGATACACCCCAGATTTTCTTTTATTCCCTGCT
GTGTTTTCTATAGTTAAATACTAATAGTAATGCCTTGGCTCGTACATGGGGCACAGAAATAGAA
GAAAAATATTTAGAAGAATAATAATTTATGTCATTTCTTGTTCAGTTATGCAAGTGAAATATGT
CCTGCATCCTTGCTAGAGTAGATGACGAAATTGTCCAATTCTAGTTTTGGTAGTCTGTCTTCTC
CCTTTCTGTTTTCTTCTTTTCTATTCATGTGCCTCATTTTGCTCAAGTTTGTGACTCTGTGTAC
CCACTGCATCTTCTATTTAGAAGGTCTTGATTTTATCATCAAATAAATTTATAATCCCAGTTGA
GTATATTAAACTAAACATAACCGGCACATGAAAATGTGGAAATAAATTTTATGAGAATAAAATT
CTGTAGATAGGTAAAAAGCATTCCAAACATATAAACAAGCACACCTAAAACTATTGAAGATCAC
ATGCCTCATCTATTCATCTTCCTTCTGAGAGTGAGGTGCTAGATATTGTGCCAAAACTTGTTGC
TGATGAAGGATCTGTTATGGTGCATGGACTGAATCCTTTGTTCTGTATCAAGGCCATCACGTAG
AAGCTTAAATGTGTTGGCATTGACTCAGGTAGTGGTATGTCCTTGTTGAGATATTGCACGACTT
GCCTCATATTTGGCCTTACGCTTATTAAAGGGTGGGAGCACAGCAACCCTATATTTAGTGCTAG
GCAGGCCTCATCAATATTGTATTCTCCTTGAAGTTTGATGTCCACTGTATCAGCGAGTGAGCCT
TTATGCCAATGTTCAAGCACCCAATCAATAAGAACCAATTGGTCGTCTTCTGTGTTTTGCATGA
CAGGCTTTTGCCCACAGGTGACCTCAAGAATGAACATGCCAAAGGCAAATACATCTGTAAGAGG
GGTCGCTTTGCCACCGCGTGCTAGCTCTGGAGCTAGGTATCCTATGGTGCCAACCACTCGTGTG
GTTTCTGGATCAGTACCATGATCATACAACCTTGCGAGACCAAAGTCACCTATCCGTGCATTTG
TGTCGTTATCGAGGAGTACATTGCTTGCCTTAATGTCCCGATGAATGATAACTTTCTCGCTCTC
TTCATGAAGGTAGAGTAATCCAGATGCTACACCTTTGATGATTTGGAATCTTTGAGTCCAATCT
AATGTAGGCTTGCCCTCTTTACCATATAGGTATTTGTCAAGGCTTCCATTTGGCATATAATCAT
ACACTAAGAGAAGTTCACCTTTTCGCCGGCAATATCCCAGTAACTGCACAAGATTGCGGTGTTG
AAGGCAACCAATACTAACAATCTCTGCAATAAATTCTTTCATGCCTTGGGTTGAGTCATGTGAC
ACCCTTTTCACAGCTATATCCAATCTAGATATAGGGAGCACCCCCTTATACACACTTCCAAACC
CTCCTGTACCTAGTAGGTGCTTATTTTTGAATCCTTCTGTGGCATCAAACAAATCCTTGTAACA
GAACCTCCGTGGCCCATACTCGACTTCCCAATCTTCGCGTAGCTCAGCATATCTTAGATTCCTC
CGCATGCACAGAAAAATGGTAGTGCCCGCAGAGAGGAGGAACACCACAGCTACTATTGGCAAAA
TTGTCTGCAATACCTTGGACCGAGCCTTTTAACCTAGACGAGGAAGCTTGGCAATGTCAATTGA
TGGAGCCGGGCTGTTCATGCCGAAGCTCCAACCTAGCACATAGTGTTTTCCACTGACTGTTCCT
GTTGAAGATGAGAAGCCAATATATGCCGAGTCAGTGAGCACTGTTGATAGATTGTAGGTAGTAG
AAAGCAGTGGCTTCACAGGTTTTTCCACATTGAGGGGGGCCATGGTCACATTGATCTGTGTGAT
TTCTCTATCATAGTTTACCCAAACTTGCATCGCCTTCTGGCTAATGAGTGTCAAATTCTTAAAG
TCACCACTCTTATCATCGTAAAAGCCAGCATCACGAGATTTCATGGAGTAAAGACTGTTGATAT
TGATGCCAATGTGGTTATTACTGATGTCTTGTAAGTCATCATTTTGGACAGTATCGAGCTCGAT
AGCAAAGATGTGGTTGTTTGGGTCTCCATTGTTCTTGTTGTTGAAAAGGCCCAAATACTGGGTC
CAGAACGCACTTGCGAAATTCTTGCTTGGAGCAATGAAGAAGGCGAGGCCATGCCCACATGAAT
CAGGGTAGTCACAGAGGATAGCAAACACAAACGATATGGAGAAGGACTGCACCGTTCCATTAGG
CGACTCGTGGAGATGCAGTGGAGTCGGATGGAAGGCATGGCCTTTCAGCCGAACCATGCCATTG
GTCAGCTCCAGGAGGCCGCTTGGCGTGACTCTGGCTCCACCATCAAGGGTGAGGTTGCTGCCGG
TGAAACCGGAGTAGACAAATTGGTCAACAGCATCACTGCACCCTGCAAGAACTGCTAGCAGGCC
GAACAGCATAATCTTCATGCTAGGCTTTTCTTCTACTTGCATATTATGGATCATGCAGTGTGGT
TTGCAGTGCCACACTAACATGCATTCTCAATTTAATCTGGATCTAGGCTATTTATAATTAGTTA
TGGCTTGCTTGTCCAAATCCTCTGCATACTTTTCCTAGCCTCCTTCCTGTTTGTTTCCTACATG
CCTACACCAAAGTATGCATCAAGCAATAAATGCTGAAAATGACATGCTTATTTGAATTAATAAT
GGAAAATATATTTATTTGTCTGGGCCACTAAGAAACAAATTAAGGTGCATGAGATTATACATCT
GTACTTGTTTGACGTATGAATGACCAGAGGGTTAGTTCTAGACTGCTAGGTTGCTACATAATTT
TGGCTTTGTTTACATCTGACAATAAATTTGACGCTGACCATATTGAAGCTCCTATAAAATTCTA
GCAGACATCACATCATTTGTTTATTAAACATTTCTTTCAATCACGTAATTTTTCATTGGTGCCT
ACTAATAGTCAACCCACTCCTTTGGTCATAGTATAGCAGCTAACAAGTGGTATGAACAAAACAT
TGGCCAATGGGATATCTCAACAGTCTGAATATTAATACAGAAGCTATATTTTTCTGAACTTGGA
GGCGGCATCCTTGACTGGGAATCAAGTTTCAACCCAGTGATGTAAGTAGCAAAGGTATGTTGTC
TGACAAATTCCCAGTGCATTGATGACTTTGCATGGTCTGCCTTGTCTTCTCTGGACAAACAGAA
AGTGACATCATTTTCTTTGCACACAGACCAACTAGTGATCTGTCGAAGCTATCCTTCTTGGGCT
GTGTTTTCCCCTCTTGTTGAGAATGCCATTTGTTCTGGTGGAAGTCTGCAAGCTTGGTGTTTCA
TGCTGGTGTCAGGATGACATATGGACATTCTGAAATAAAATGAAGTCTCTGAATTCCACCTTTG
TTCTGAACTTCTGATATTAGATTGACAGAAGTTGGTGTTAAATTTTCAGCCTGTTCTTTTTTCC
TTCCAACTTTCAGGGATTGGTGTAGCTATATTCCTTGAGGAATCTTGAATCTGTCTTTGAAGGC
TTGAAGCTGTGTAAGACTGCATTGTCGATTCGGCAAACTTCTGGGCCCTTGGTCTTTGAATCTG
TCTTGAGGAATCGCTGATCTGCAACTACCTGGGTCCATGATGGATGTGTAGAGAGAAGCAGTGT
CGGTCGATCTGGGCTGAGCCTGCTTCAATGTTTTAATTGGCTTCTTTTTTCCAGACAGACATCA
ATTGCAGTGACAGGTAACAACTCAAGTAAATATTTCAGTTTTTGCTGACAATGGAAGTCACGAC
TTTACATGCTACCCACTGATGACTGATCCACATAGCTTTGCAGTTCACAAACCTCCATCTATAT
TCACCATAGAATCAATCCAATCACAGTAACTTGCACAGATTTACAGTTAATCAAAATACACTGC
ACTTCTACAAGTAAGGTAAATCTAATGATACTACAACAAAGGACATTTTATAATTGCCTGTCAT
TTGCCTAAGCAGGCAAGCACTTGAAAGTTCTAACAAATGCATTATGTGCAGGTCTCATCTTCCA
GACAAGATGTCTGGTGTCATTGTGCCCAAGCTATTCCCTGACCACGGGTACTGTGCGACGTATG
GGTCGACCCCTTCATTGTGCATTATTGCCAGCAAGCTGGAGTTCAGGGTTGCCGGTGTAAACTC
CGGCAGCGGTGCATCTCCATCAAGGTATTGCATGACCTGCCGCATGATAGGCCTTGCTCCGGGT
ATTGGGTGTGAGCACATCAGCCCAAGTGTCAACACCAGGCATGCCTCATCGACGTTGTAGATGC
CGTGCAGCTTCGGGTCCACTGTCTCTGGCAGCGAACCCTGGTGCCAGTGCTGGAGAACCCAGTC
AACCAACATCTTTCGGCCGTGGTGCGCACTGTTGCTGATCGGCCACCGGCCACAGGTGACCTCA
AGAAGGAACGTGCCGAAGGCGAACACGTCGGTGAGAGGGGATGCCTTTCCTGTGCGTGCCAGCT
CTGGGGCTATGAATCCCATGGTTCCAACCAGGTGCGTGGTCTGTGGGTTGGTGCCATGTTCATA
TAATCTTGCAAGACCAAAGTCGCCTAACCGGGCATTCATTTCACTATCCAGGAGCACGTTGCTT
GCTTTGATGTCACGGTGGATGACAACCTTGTCCCACTTCTCATGGAGGTAGAATAAGCCAGAAG
CCACGTCTTTGATGATTTGCATCCTCTGAGCCCAATTTAAAACAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021