Detail information of AT1G18270_circ_g.5


General Information
CircRNA Name AT1G18270_circ_g.5
ID in PlantcircBase ath_circ_003243
Alias NA
Organism Arabidpsis thaliana
Position chr1: 6285096-6285826  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT1G18270
Parent gene annotation Ketose-bisphosphate aldolase class-II family protein
Parent gene strand -
Alternative splicing AT1G18270_circ_g.1 AT1G18270_circ_g.2 AT1G18270_circ_g.3 AT1G18270_circ_g.4 AT1G18270_circ_g.6
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G18270.2:4
AT1G18270.3:4
AT1G18270.4:4
AT1G18270.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCTTAGCAAGAATATAACGAGGTCTGGTCGATATCTGGCTCACTACTTCAACCAGAGCGGAGC
TCACTTTGCTGTTAATATCAAGACTTTCCGAAGATGctgcaatatagcaggactattttcttcc
tctgcggccgctacaacagcttctattccttccaggttatacacgttaaatgctccaactgcat
atccacct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 440
Transcript exons: 6285096-6285206,6285279-6285364,6285447-6285591,6285729-
6285826
CTGCAATATAGCAGGACTATTTTCTTCCTCTGCGGCCGCTACAACAGCTTCTATTCCTTCCAGG
TTATACACGTTAAATGCTCCAACTGCATATCCACCTTTTTCTGCATTCAGAAGCAGCTCTTTTG
TCGACCGTCCTGCTACCACTGACCAAGACTTCACAACTTCTGCAAGCGCTGTGCTGTTACCAAC
ATTACCAGGGAAAACAATGTAGGGGACCCCTGGATGTCTACTTTCTGGACCTAACTTCCATACT
GGAACACCAGCAAGGGCTTGACCAATCACAAGTGCACGTCGTGCTTTCAGGGCTTTCGTTGCTG
TGTCTGATGACGTAATTCCACCCTTAGCAAGAATATAACGAGGTCTGGTCGATATCTGGCTCAC
TACTTCAACCAGAGCGGAGCTCACTTTGCTGTTAATATCAAGACTTTCCGAAGATG

Genomic sequence CTGCAATATAGCAGGACTATTTTCTTCCTCTGCGGCCGCTACAACAGCTTCTATTCCTTCCAGG
TTATACACGTTAAATGCTCCAACTGCATATCCACCTTTTTCTGCATTCTGTTTTACATAGAAAG
ACAACATCAATATGAGAAGAGATATATGAAGCTAGAGAACGAGAAGGATACTCACCAGAAGCAG
CTCTTTTGTCGACCGTCCTGCTACCACTGACCAAGACTTCACAACTTCTGCAAGCGCTGTGCTG
TTACCAACATTACCTGTTACATATAAGGAAAAAGAGTTGATTAAGAATACCTATTTTTATTCAG
TTAAATGTTTTGAATACAAATTAAGATTTACCAGGGAAAACAATGTAGGGGACCCCTGGATGTC
TACTTTCTGGACCTAACTTCCATACTGGAACACCAGCAAGGGCTTGACCAATCACAAGTGCACG
TCGTGCTTTCAGGGCTTTCGTTGCTGTGTCTGATGACGTAATTCCACCCTAAACAATGACGTTA
CAGTGTCATAAAAAAAAATCGAAAGGCTTTGGATCATAGAACAGTTACCATTTCAACTGGGGAT
TGACAGAGTGTGTCAGGAAGTTTATGAGATGGAAAGATAAATATAGAAGCTAAATACCTTAGCA
AGAATATAACGAGGTCTGGTCGATATCTGGCTCACTACTTCAACCAGAGCGGAGCTCACTTTGC
TGTTAATATCAAGACTTTCCGAAGATG
Conservation Information
Conserved circRNAs NA
PMCS 0.280625947
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017