Detail information of Os09g0361366_circ_g.4


General Information
CircRNA Name Os09g0361366_circ_g.4
ID in PlantcircBase osa_circ_038958
Alias Os09circ03475
Organism Oryza sativa
Position chr9: 11808411-11808512  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method SMALT, Segemehl
Parent gene Os09g0361400
Parent gene annotation Outer mitochondrial membrane protein porin (Voltage-dependent an
ion- selective channel protein) (VDAC). (Os09t0361400-01);Simila
r to Mitochondrial outer membrane protein porin. (Os09t0361400-0
2)
Parent gene strand +
Alternative splicing Os09g0361366_circ_g.5
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os09t0361366-00:1
Os09t0361366-00:1
Os09t0361400-02:1
Os09t0361400-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAGCTGTTGGAGCTGAGCTGACCCACAGCTTCTCGAGCAACGAGAACTCCaagggagatagtc
tcactgcatcttattaccacattgtgaaccattcggcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAGGGAGATAGTCTCACTGCATCTTATTACCACATTGTGAACCATTCGGCCACAGCTGTTGGAG
CTGAGCTGACCCACAGCTTCTCGAGCAACGAGAACTCC
Conservation Information
Conserved circRNAs NA
PMCS 0.223041422
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015