Plant Circular RNA Database

Detail information of BGIOSGA010408_circ_ig.1

			
						 General Information
					
						CircRNA Name
						BGIOSGA010408_circ_ig.1
					
						ID in PlantcircBase
						osi_circ_013216
					
						Alias
						Chr03:22818562_22820371(MH63RS2), Chr03:22604993_22606802(ZS97RS2), Chr03:22818562_22820371(MH63RS2)
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr3: 23258475-23260282  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							ig-circRNA							
									
						Identification method
						CIRI2, CIRCexplorer2, CIRI2, CIRI2, CIRCexplorer2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						root, leaf, panicle
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-TA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	BGIOSGA010408_circ_ig.1
ID in PlantcircBase	osi_circ_013216
Alias	Chr03:22818562_22820371(MH63RS2), Chr03:22604993_22606802(ZS97RS2), Chr03:22818562_22820371(MH63RS2)
Organism	Oryza sativa ssp. indica
Position	chr3: 23258475-23260282 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	ig-circRNA
Identification method	CIRI2, CIRCexplorer2, CIRI2, CIRI2, CIRCexplorer2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	NA
Support reads	NA
Tissues	root, leaf, panicle
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-TA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TATCCAGTGCATTCTAAGAGAAATCCAGCATACCTCGCCAAAAGATGAGAATCTCTCTGATGTA
TCTGTAATTTAGCTTCAGCCTCTTCTTCTGTAACTTcatgtgttgactggacattggcttctgg
aattgtagtagcacagaactaaggccctctgtgactgattttacattaacaggcaactgcttta
tgttcctg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CATGTGTTGACTGGACATTGGCTTCTGGAATTGTAGTAGCACAGAACTAAGGCCCTCTGTGACT
GATTTTACATTAACAGGCAACTGCTTTATGTTCCTGACTTTCTGCATAACGTTAAAAAATGTGA
GAGATAACTGTATTGAATTAGAATATAAGCAACATAAAAGTTGCCCCTTGAACTTACCTCTTGT
GTCACAAAGTACAACTGAAACGACAACTTATCATAGTAATGGTGAGCCCTATGAGAAACAGAAG
GAGCAATTACATGCCTCATAGAGCCCCATAACACGGAACCAAGGTGTGCGAGGAATGAATCACG
AGCCACAGTGTAACTATGATGTTCCTGGCACATGTGATTGAACTTCGTCATTAGAAGTACGATT
AAAATTCTGTTATCTTAACAATTAAATATTAGACTTCAGTAATTGCATGCACAATTGCACAGTG
AATATGTGTTTTTAGTTGTCCTGCTTATTAGGGAAATGTTTTGCTATAGAAACTGATTTTACAA
TGTTCTTTTTATGTTGTGTCGTAGAAGCTGTTGGACAAAGCTAACCTCTGGAACATCTTTAAAT
AAGTTCCACTTTTCCATCCTATTCAATGCATCAAGAGCTTTCTTCTTATTAATATCATCCGAAT
CTCCAGTATTGTAACCCTCCAGTTCACTTTTCAGATCATGCCTTCTCTCATCAAGTTCTACATT
TGAAGAAAAATAAAGGTTCTAGTTAAAAGGGAAGGTCTTTCTGATAAACCCAATTAAATTTTAT
GAACAGTACAAGGCTGCCCAGCAACTACCATAAACTGAAGATCTCAGCAAAGAAAAGAACACTG
AATAGCTTATTGGCATCAACAACTTGTGAGAAAACATGGCCAAAGGACAAAACAATAAAAACAA
TGTTGTAATGATTGGAGAGAAACATAAGGAATGTCTTTCATGTATGGTACAAACAGTAGCTCAA
GTGCATATAACTCAAAAATATCAACTACAAGTAAAGTCTACCACTATGTAGTAATGTGAATAAT
TAAAAGGAACACCCAAATTTATGGCCATGAAAAGTACCTTTGCAAAGGGCAAGCTGTACCCTTC
TTCCAACACAATGCTTGAAGGCAAAAAGTTCGTATACATCAATCTCTGCCAATAGGATATCTAC
TGCATGGTAATTCTGAACCCCCAAAATGGCATCAGATAAACTAAGTCAAGAGCTAGTTCAAGAT
GTCATAACAATATACAGAACCAAAAGGGAAAGTTACACAACAAACAAGATTGCAAGAAGAAACT
TGTTGTCTATAGTGTTAACATCAGTTGGGACTTGGGATGCCACTATTTTGTGGAATATCGTTGC
CAGTGATGTGCTAGTTGTAATGATTAATGGGACCACTTGTATTTTGAATCGTCAATAGGTCTAG
CAAAAAAAGGTATTTAGTAGAATACAGAGCAAAATATTTCCAAGCTGCCAAAATATTTCTGCAT
CCTCTCTTCTCTACAGTTCTGATCTCAAAGCTCTCACTCTACTGATCTCAATTGAACTTTACAA
CCACCCTCCAAAATAAGAGCTAGGGGCAAGAGAAAGAAAAGGAATTGGTATAAGCAACATGTGC
ACCTTGAAAATCTACGGTACCTAACATGGAGATTACAAGAATAAGTACCATCATTTAGCCTATG
AGATTGAGTAGTAAAAAATAATTTATAAACGAATAGATTGTTAATATCCAGTGCATTCTAAGAG
AAATCCAGCATACCTCGCCAAAAGATGAGAATCTCTCTGATGTATCTGTAATTTAGCTTCAGCC
TCTTCTTCTGTAACTT
						
					

			
		

Sequences
Splice junction sequence	TATCCAGTGCATTCTAAGAGAAATCCAGCATACCTCGCCAAAAGATGAGAATCTCTCTGATGTA TCTGTAATTTAGCTTCAGCCTCTTCTTCTGTAACTTcatgtgttgactggacattggcttctgg aattgtagtagcacagaactaaggccctctgtgactgattttacattaacaggcaactgcttta tgttcctg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CATGTGTTGACTGGACATTGGCTTCTGGAATTGTAGTAGCACAGAACTAAGGCCCTCTGTGACT GATTTTACATTAACAGGCAACTGCTTTATGTTCCTGACTTTCTGCATAACGTTAAAAAATGTGA GAGATAACTGTATTGAATTAGAATATAAGCAACATAAAAGTTGCCCCTTGAACTTACCTCTTGT GTCACAAAGTACAACTGAAACGACAACTTATCATAGTAATGGTGAGCCCTATGAGAAACAGAAG GAGCAATTACATGCCTCATAGAGCCCCATAACACGGAACCAAGGTGTGCGAGGAATGAATCACG AGCCACAGTGTAACTATGATGTTCCTGGCACATGTGATTGAACTTCGTCATTAGAAGTACGATT AAAATTCTGTTATCTTAACAATTAAATATTAGACTTCAGTAATTGCATGCACAATTGCACAGTG AATATGTGTTTTTAGTTGTCCTGCTTATTAGGGAAATGTTTTGCTATAGAAACTGATTTTACAA TGTTCTTTTTATGTTGTGTCGTAGAAGCTGTTGGACAAAGCTAACCTCTGGAACATCTTTAAAT AAGTTCCACTTTTCCATCCTATTCAATGCATCAAGAGCTTTCTTCTTATTAATATCATCCGAAT CTCCAGTATTGTAACCCTCCAGTTCACTTTTCAGATCATGCCTTCTCTCATCAAGTTCTACATT TGAAGAAAAATAAAGGTTCTAGTTAAAAGGGAAGGTCTTTCTGATAAACCCAATTAAATTTTAT GAACAGTACAAGGCTGCCCAGCAACTACCATAAACTGAAGATCTCAGCAAAGAAAAGAACACTG AATAGCTTATTGGCATCAACAACTTGTGAGAAAACATGGCCAAAGGACAAAACAATAAAAACAA TGTTGTAATGATTGGAGAGAAACATAAGGAATGTCTTTCATGTATGGTACAAACAGTAGCTCAA GTGCATATAACTCAAAAATATCAACTACAAGTAAAGTCTACCACTATGTAGTAATGTGAATAAT TAAAAGGAACACCCAAATTTATGGCCATGAAAAGTACCTTTGCAAAGGGCAAGCTGTACCCTTC TTCCAACACAATGCTTGAAGGCAAAAAGTTCGTATACATCAATCTCTGCCAATAGGATATCTAC TGCATGGTAATTCTGAACCCCCAAAATGGCATCAGATAAACTAAGTCAAGAGCTAGTTCAAGAT GTCATAACAATATACAGAACCAAAAGGGAAAGTTACACAACAAACAAGATTGCAAGAAGAAACT TGTTGTCTATAGTGTTAACATCAGTTGGGACTTGGGATGCCACTATTTTGTGGAATATCGTTGC CAGTGATGTGCTAGTTGTAATGATTAATGGGACCACTTGTATTTTGAATCGTCAATAGGTCTAG CAAAAAAAGGTATTTAGTAGAATACAGAGCAAAATATTTCCAAGCTGCCAAAATATTTCTGCAT CCTCTCTTCTCTACAGTTCTGATCTCAAAGCTCTCACTCTACTGATCTCAATTGAACTTTACAA CCACCCTCCAAAATAAGAGCTAGGGGCAAGAGAAAGAAAAGGAATTGGTATAAGCAACATGTGC ACCTTGAAAATCTACGGTACCTAACATGGAGATTACAAGAATAAGTACCATCATTTAGCCTATG AGATTGAGTAGTAAAAAATAATTTATAAACGAATAGATTGTTAATATCCAGTGCATTCTAAGAG AAATCCAGCATACCTCGCCAAAAGATGAGAATCTCTCTGATGTATCTGTAATTTAGCTTCAGCC TCTTCTTCTGTAACTT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osa_circ_020502 						
					
						PMCS

Conservation Information
Conserved circRNAs	osa_circ_020502
PMCS

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhou et al., 2021

circRNA

Detail information of BGIOSGA010408_circ_ig.1

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