Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d038880_circ_g.1 |
ID in PlantcircBase | zma_circ_009166 |
Alias | zma_circ_0002418 |
Organism | Zea mays |
Position | chr6: 166315165-166316698 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d038880 |
Parent gene annotation |
Putative CRAL/TRIO domain containing, Sec14p-like phosphatidylin ositol transfer family protein |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d038880_T006:7 Zm00001d038880_T001:7 Zm00001d038880_T005:7 Zm00001d038880_T009:1 Zm00001d038880_T002:6 Zm00001d038880_T007:7 Zm00001d038880_T003:7 Zm00001d038880_T008:7 Zm00001d038880_T004:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.111827091 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
166315439-166315226(+) 166316655-166315226(+) |
Potential amino acid sequence |
MYIINAGQGFKMLWSTIKSFLDPKTASKIHVLGNKYQHKLLEIIDECELPEFLGGKCNCIEGCQ RSDKGPWKDPNIIKRVLNDEANYGRQIVTISSIDGKIIRYARPDHPTRKGSDASAESGSEVEDV TSPTASRNLITHPILTPVHEESKLSPHGSTFVAHASIEENIPVVDKVVDDGWGTPRGSLQASSG FQELLEICQRINHTITEDRQ*(+) MMDGVLPEVVSKLLQGFKNFSKSARELITRLQKIDSDNYPETLCRMYIINAGQGFKMLWSTIKS FLDPKTASKIHVLGNKYQHKLLEIIDECELPEFLGGKCNCIEGCQRSDKGPWKDPNIIKRVLND EANYGRQIVTISSIDGKIIRYARPDHPTRKGSDASAESGSEVEDVTSPTASRNLITHPILTPVH EESKLSPHGSTFVAHASIEENIPVVDKVVDDGWGTPRGSLQASSGFQELLEICQRINHTITEDR Q*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |