Detail information of BGIOSGA005226_circ_igg.1


General Information
CircRNA Name BGIOSGA005226_circ_igg.1
ID in PlantcircBase osi_circ_011232
Alias Chr01:43617564_43619482(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 46460943-46462863  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA005226_circ_g.1 BGIOSGA005226_circ_g.2 BGIOSGA005226_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATCTTACATTTAATGGGATGTCCTCAACTGTTGATGAAGCTGTTCAATCTGAGCAACCAATG
TTATGCCTCAACCTATACAAATGCCTGTCACCTGAGggctcgtcgacggttgcggagcgttctg
cggcggagcttggcggggcgatttgggggcgaggttttgcgggttcttcgacggttgcgggcgt
tgagcggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCTCGTCGACGGTTGCGGAGCGTTCTGCGGCGGAGCTTGGCGGGGCGATTTGGGGGCGAGGTT
TTGCGGGTTCTTCGACGGTTGCGGGCGTTGAGCGGCGGAGCTGTGGGTGAGTGTAATTCTACGT
TTTTCTTGCCAAGATTTCTGCTTCGCAGCCTGAATTGTATGGCAGTTTGCCTGAATTGTATAGA
TGGGCTTGTTTAATTTACGTGTTCCAGACCTCTTGAAGGTGAGCTGATAACCCGGTGTCTGGGT
GGTTAACTATCGTATATATGTAATGACGGGATAGTGAAAATACATCATAAGCTGATGCGTGCAA
TTACTTCGTATTGACAGGACAGCCACATGGAGAAAAGTCGGGACAAGGTCAACATTACCCCAGA
TCTGAACAAAGGAAAAGAAACGGTATATGCACTATTGCAGTTTTTTTTTTTAATATGAACTGCA
TGCCCACCCCCTCCCCTTTCCTTTTTTTTTTGTTTTGTAATATGGGATCTAATAGTAGGTACAT
CAACAGGTGATTCCATTGCATATCACCCGATTAGATATGAGGGAGGTGGATCAATCTAGTTATG
TGGCTAGACTAAAGCTCAAGAAGCCTTCTAATATGCCACCTTCCACTTTACCTCTGCACTTGCC
AGTGATAGGTTTGGATGTGAATAAACCAGATAACCTACACTGTCTGATGATTATGCAAAATGTT
AAGCACAGGAACGTTTTGCAAATGGAGGCAGTGAAACAAATAGTAATTGGAGAGGCAAAAACAC
CAGTACTAGCTATGTTTGTTGAATCTTTTACTGGGCGTTTGCCAGCACTGCTTCGAAAAATGAA
ACTGGGCGGCATGTCTGACATTCTTCCTTCGGTTGAGCTTGCTGACGTAGTCAGATAAAACTTA
CTTACTTTTCTTTAAAACTGTGCCTAATGCTCTCAATGTTTGTAATGTAATTTATGTGTATATG
CACTAAAATATAAATCATTGCAGGCAAATCATTGAGGGGTGGGAGGAGCTTCGAGTAAATGGGC
TTTATCATGGAAATATCTGCTTGGAAAATGTATATTATTGCAAAGATAATGAAAAGATCACCAT
CAAACTTGCAAACTTCCAAAGCAAAGGTGAACCTATTAACAAGTATAGGGTATGTTAGCGAGAT
AGTTTGACATACAGATATAATAAAACTTGCATTTCCAGGTGCAATGAGTAAAGAGGCAGCACAA
TTGGAAGATATCAATGCAATTGGTAGGATGCTTAAGTCTATTTCCGCTCTGGCAAAGATAGGCG
TACCCCATCAAGCAGAACGATACATGTTAGTTGATCACCTGGCAATGAATTTGGAGTTTCTTGC
AAACACGTAAGTACGTTGCGTTCATTGAATCAGTATTGTCTGCCTAGTCTTTGCATGTTAGCCT
TATACACACATTTTTTTTTCAGCCAGCAAATAGGAACAATCAAAGACGTGATTCTAGATCATGT
TTTTTTCTGGTTTAAAGAAAGGAGGAAGAGATTCTTCATCTATGATATCCCAAAGGCCTTAAAA
GATGCTGCATTCTGTAACAATGTCCGCAGAGGACAAACATGTGTTCTGGAATGGGACAAAAAGC
CACATCACGGACTTCTAGGCTCAATGAACAGGTATAGGAAAACAAATTTGAATTTGCCTGCTTA
TGATGGAAATGACCCAATTCAGAATGTGAAATTTGTGAGTGGAGCATACACGCATGAAGAGGAG
GTGCAGGTATATTTGTTCACACAAATATAAATTGGTCTGATACAATCACAAAAGGAAGTTATGG
TATATTATGAAAATTTTGTTATTATAGGATGATCTTACATTTAATGGGATGTCCTCAACTGTTG
ATGAAGCTGTTCAATCTGAGCAACCAATGTTATGCCTCAACCTATACAAATGCCTGTCACCTGA
G
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021