Detail information of BGIOSGA002701_circ_igg.1


General Information
CircRNA Name BGIOSGA002701_circ_igg.1
ID in PlantcircBase osi_circ_009530
Alias Chr01:1601033_1601844(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 1918503-1919315  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGGATTTGATCTTTCAGAGAGGGAGACCGAAACCCTCAACCGCGCCAGGCAGCTCGTCTTCGG
CAACGACAGCCTCGCCGCCGTCGGCGCACAGCTCAAggagacaagaagggaaccccctggacct
gaacaacctgccggatgagttcggcaagcaaacggtggagagctcaacgaccaccgccgcatcc
agcgccga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAGACAAGAAGGGAACCCCCTGGACCTGAACAACCTGCCGGATGAGTTCGGCAAGCAAACGGT
GGAGAGCTCAACGACCACCGCCGCATCCAGCGCCGAAGCATCCAGTAAGGATATCACTGCAACA
TTCATAACCAGCAAATGCTAGTACATATATAGCTTTAATGTAGAGTAAAAAAGATAGATTTTTG
TTTTGTGTGTGTGTCTGAATGTGGTCATCTACTTAAAATTTTCTCCTGAACCGTCTCGATCATT
ACATGGAAAAAAGAAAACCTTAATTGTTGCATTTTAGATAAAGGAAGTACAGTTTCATAGCTTC
AGAATGGGATAACTGAATGATTAGCTAATTGTTTACAGGGGTTACTAAGAAGAAGAGTAATGGA
GGGAAGGATGAAGCTGGCAAGGTGTACGAGTGTAGGTTCTGCTCCCTCAAGTTCTGCAAATCTC
AAGCGCTGGGTGGCCACATGAATCGCCACCGCCAAGGCAAGATCACACAACAACCTACCTAGCT
ATATAATCGATATTTTTTTTATCAAAGAACCAATTTGATCGATCACAAATATATGAAGAAGTTC
GTTTTTTTTTTATCTTCCACGCATCTAATATATTCTAATCCAACAGTAACCATTTATATCCTTA
AGAAAAAGATTCAATTTTTTGATCTTCCATGCATCTAATCTCGCATTCCCTTTGCCTCTAACTT
GTGGGATATTGGGATTTGATCTTTCAGAGAGGGAGACCGAAACCCTCAACCGCGCCAGGCAGCT
CGTCTTCGGCAACGACAGCCTCGCCGCCGTCGGCGCACAGCTCAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021