Detail information of BGIOSGA032639_circ_g.3


General Information
CircRNA Name BGIOSGA032639_circ_g.3
ID in PlantcircBase osi_circ_008834
Alias Chr10:6951851_6952193(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 5318186-5318528  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA032639
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   GT-TA
Number of exons covered BGIOSGA032639-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTATAGAAATTTAAATTGAAGTTTCTCTTTTCATTCCCAACTAATGCGTTATGAACAATTGAA
CTTGTGGCTAAGTAGCTTTAAATATATATTTTTATCggtatgctacatatcccacatgttaaac
cacgttttcatttccacaaatactgtcatcgtgctgagcttttgttccctggttcctgttagaa
tagtctat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTATGCTACATATCCCACATGTTAAACCACGTTTTCATTTCCACAAATACTGTCATCGTGCTG
AGCTTTTGTTCCCTGGTTCCTGTTAGAATAGTCTATGATGTGTAGCATATCCCACATGTTAAAC
CACGTTTTCATTTCCAGAAAATACCGTTGTGCTGAGCTTTTGTTCCGTGGTTCCTGTTAGAATA
GTCTATGATGTGTAAAACGGCAAGCAGCGGCTTTAGAATGCAGCGACGTCCAGTATAGAAATTT
AAATTGAAGTTTCTCTTTTCATTCCCAACTAATGCGTTATGAACAATTGAACTTGTGGCTAAGT
AGCTTTAAATATATATTTTTATC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021