Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d020602_circ_g.1 |
| ID in PlantcircBase | zma_circ_009363 |
| Alias | Zm07circ00066, zma_circ_0002399 |
| Organism | Zea mays |
| Position | chr7: 124324121-124329756 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | CIRI2, find_circ |
| Parent gene | Zm00001d020602 |
| Parent gene annotation |
alpha/beta-Hydrolases superfamily protein |
| Parent gene strand | + |
| Alternative splicing | NA |
| Support reads | NA |
| Tissues | leaf, endosperm, root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Zm00001d020602_T046:1 Zm00001d020602_T038:2 Zm00001d020602_T004:5 Zm00001d020602_T011:5 Zm00001d020602_T031:5 Zm00001d020602_T019:5 Zm00001d020602_T030:5 Zm00001d020602_T034:5 Zm00001d020602_T001:5 Zm00001d020602_T040:1 Zm00001d020602_T014:6 Zm00001d020602_T002:5 Zm00001d020602_T012:4 Zm00001d020602_T037:5 Zm00001d020602_T039:2 Zm00001d020602_T027:6 Zm00001d020602_T003:5 Zm00001d020602_T045:1 Zm00001d020602_T020:5 Zm00001d020602_T022:4 Zm00001d020602_T024:6 Zm00001d020602_T005:4 Zm00001d020602_T021:4 Zm00001d020602_T009:5 Zm00001d020602_T006:5 Zm00001d020602_T026:4 Zm00001d020602_T016:6 Zm00001d020602_T018:5 Zm00001d020602_T035:5 Zm00001d020602_T007:6 Zm00001d020602_T025:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.104966412 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
124327640-124324135(+) |
| Potential amino acid sequence |
MYVKLLTSYIFVSCYKVLVAVEQGETLVKALEEAVPEDVRGKLTASVTEILHSKRETFSLGALN RLGWNNVRPTTTKTLAQEKLKDSDHESGLKDTKMVDQNRISATAFEGDLKDINMTNDDKPGESI ESSQGKPSQTSEPVGTATEIGTEQPYKSDKANYGTNDSSEGQHITEQDNEMTPKQVSDDQSVAN CNGPSKEREQSADATTDQNLQSNTTTEKEGDTSRTGEDKTAHNVNDQSTQVSKTEESKPSPITV TQALDALTGFDDSTQMAVNSVFGVLENMIDQFEKQQDSENGESADGNDGITSVDETESHVKENT ENVSSGEDINHSSKQPEGSSPGKTDSIMSKYDCAFGEENPNLSIVSYGRGKMRYYRGNKVGDHV GADGIERVSGLPDYLLDIAVNSYLKAQYAMYLREFLYTELQLKSPESNSATDLFLDPQEGKWKI EEQMGNVQNDNFESSQESSKMDNAIEPPYFIPGKNPDIAYKSNKWNNTVATRSKPGNDLNEALT HFVRDELSSALKIEVGRKIGITDTKQLERSLANDVEQIAAEVSKTVVLDCELYSAIHVQRSPTT IKFGSTHGKNVVEAVSTAVQQSQHLRNILPVGVIVGVTLACLRNYFHVGVSKHGDHMIATMKSD IFGEEVIVQDSSKENVQDSGKANTNDNNIEKTSGENQQDMTKSQGQDMMVGAVTAALGASALVA HQVIYSS*(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Han et al., 2020; Ma et al., 2021b |