Detail information of Zm00001d020602_circ_g.1


General Information
CircRNA Name Zm00001d020602_circ_g.1
ID in PlantcircBase zma_circ_009363
Alias Zm07circ00066, zma_circ_0002399
Organism Zea mays
Position chr7: 124324121-124329756  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2, find_circ
Parent gene Zm00001d020602
Parent gene annotation alpha/beta-Hydrolases superfamily protein
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf, endosperm, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d020602_T046:1
Zm00001d020602_T038:2
Zm00001d020602_T004:5
Zm00001d020602_T011:5
Zm00001d020602_T031:5
Zm00001d020602_T019:5
Zm00001d020602_T030:5
Zm00001d020602_T034:5
Zm00001d020602_T001:5
Zm00001d020602_T040:1
Zm00001d020602_T014:6
Zm00001d020602_T002:5
Zm00001d020602_T012:4
Zm00001d020602_T037:5
Zm00001d020602_T039:2
Zm00001d020602_T027:6
Zm00001d020602_T003:5
Zm00001d020602_T045:1
Zm00001d020602_T020:5
Zm00001d020602_T022:4
Zm00001d020602_T024:6
Zm00001d020602_T005:4
Zm00001d020602_T021:4
Zm00001d020602_T009:5
Zm00001d020602_T006:5
Zm00001d020602_T026:4
Zm00001d020602_T016:6
Zm00001d020602_T018:5
Zm00001d020602_T035:5
Zm00001d020602_T007:6
Zm00001d020602_T025:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGGGAGAACCAGCAGGATATGACGAAGTCACAGGGTCAAGATATGATGGTCGGGGCTGTGACG
GCTGCCCTAGGTGCTTCTGCTTTGGTAGCACATCAAgttatttacagcagctgacagtgatgat
atctgcacagtggtacagtttataaacagcaagagaccttggacaacactaatgggtgttggat
ggggctat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 3109
Transcript exons: 124324121-124324397,124324667-124324852,124325048-124325
200,124326493-124326915,124327687-124329756
GTTATTTACAGCAGCTGACAGTGATGATATCTGCACAGTGGTACAGTTTATAAACAGCAAGAGA
CCTTGGACAACACTAATGGGTGTTGGATGGGGCTATGGGGCAAATATGCTTACAAAGTACCTCG
TGGAAGTTGGAGAGTCGACTCCTCTTACTGCTGCTGTTTGTATTGACAACCCTTTTGATATAGA
AGAAGCAACGAGATCATTTCCTCATCATATAACTCTTGATGAAAAGCTCACAGCTGGCCTGGTT
GATATTTTGCGTTCTAATAAGGAACTCTTTCAAGGTAAAGCTAAAGGTTTCAATGTTCAAAAGG
CTTTATCAGCCAGTTGTTTGCGTGACTTCGATGTTGCTATATCCATGGTTTCACATGGGTTCGA
TACTCTTCATGACTTCTATGCTGAAATTAGTACAAGGCTGTCAGTTGCCCATGTTAGAATACCT
CTACTTTTTATACAGAGTGATGATGGGACTGTGCCGCTTCTTGCAGTGCCCCGCAGTTCAATAT
CAGAAAATCCTTTCACAAGCCTTCTCTTTTGTTCTTGTGTACACTCCACTATGTCCATGTTTCA
GAGATACAGTGTGTTATGGTGCCAGAACCTTGCCTTAGAGTGGTTATCAGCAGTTGAGTTTGCT
CTTCTGAAGGGTCGCCATCCACTTATCAAAGATGTGGACATCACAATTAACCCGTCCAAAGGTC
TAGCATTTGTTGAACCTCAAGTGAATCAAAGGAAATCTCCAAAAGGAAATAGTTTTCGTCAACA
TTCTGAGCTTATTTTGTATAATAATGTTGCACATGGAATAAATGGACTGCTAGTTGATTCTGCA
AATAAGTACTCTGGTGCTCAAAACAAAGAAAATGGGCAGTTGAATAATAATGGTGACATAGGAA
CTGTAGACAAAGATCTGGAAGAAGAGTTAGAAGAGAGTTCTGAAGATGTTGAGAAAGGTCAGGC
ACTACAATCAGCAAGTCTTGTGATGAATATGCTAGATGCTACAATGCCTGGCACTCTCAATGAT
GATCAGAAGAAGAAGGTTCTGGTAGCTGTGGAGCAAGGGGAGACTCTTGTGAAGGCTCTAGAAG
AAGCTGTACCTGAAGACGTGCGCGGAAAACTTACAGCTTCTGTAACTGAAATTTTACATTCCAA
ACGAGAAACTTTCAGTTTAGGTGCATTGAATCGACTTGGCTGGAACAATGTAAGACCAACCACT
ACCAAGACATTGGCCCAGGAAAAGCTCAAAGATTCAGATCATGAAAGCGGGCTTAAGGATACCA
AAATGGTTGATCAGAACAGGATTTCTGCAACCGCTTTTGAGGGGGATCTGAAAGACATTAATAT
GACAAATGATGATAAACCTGGAGAAAGCATCGAATCGTCACAGGGAAAGCCTTCTCAAACTTCT
GAACCTGTTGGAACAGCGACAGAAATTGGAACTGAACAGCCTTATAAATCAGATAAAGCTAATT
ATGGAACCAATGATAGCAGTGAAGGGCAGCATATAACAGAACAGGACAATGAAATGACTCCAAA
GCAAGTTTCTGATGATCAGTCAGTGGCCAACTGTAATGGGCCTTCTAAAGAAAGGGAGCAATCA
GCAGATGCTACAACAGACCAGAATCTACAATCTAACACAACAACAGAAAAGGAAGGTGACACAA
GTCGCACAGGTGAAGATAAGACTGCTCATAATGTGAATGATCAAAGCACACAAGTCTCTAAAAC
AGAAGAATCAAAACCTTCCCCCATTACTGTGACCCAGGCATTAGATGCATTAACTGGGTTTGAT
GACTCGACTCAAATGGCTGTCAACAGTGTTTTTGGAGTTCTTGAAAATATGATTGATCAGTTTG
AGAAACAACAGGACTCTGAGAATGGTGAAAGTGCTGATGGAAATGATGGTATCACTTCCGTGGA
TGAGACAGAATCTCATGTGAAAGAGAATACAGAGAATGTGTCAAGTGGAGAAGATATAAACCAC
TCATCTAAACAACCAGAAGGTAGCAGTCCTGGAAAAACTGATTCAATCATGTCCAAATATGATT
GTGCTTTTGGTGAGGAAAATCCCAATTTAAGCATTGTTTCATATGGTAGAGGAAAAATGAGATA
TTACCGAGGAAACAAAGTTGGTGATCATGTGGGTGCTGATGGTATCGAGCGAGTCAGTGGCTTG
CCTGACTATTTATTAGATATAGCTGTCAACTCTTACTTGAAGGCGCAATATGCAATGTATCTTC
GTGAATTTCTTTACACAGAATTGCAACTCAAATCACCAGAGTCTAATTCAGCAACTGATCTTTT
CCTTGATCCACAAGAGGGTAAATGGAAAATTGAAGAACAGATGGGCAATGTGCAAAATGACAAT
TTTGAATCCTCACAAGAGTCATCTAAGATGGACAATGCTATTGAGCCACCCTACTTTATACCAG
GAAAAAATCCAGACATCGCATACAAGTCCAATAAATGGAATAATACAGTAGCAACCAGGTCAAA
ACCTGGTAATGATTTGAACGAGGCACTTACACACTTTGTTAGAGATGAACTATCAAGTGCCCTT
AAAATTGAAGTTGGTCGCAAAATAGGGATAACAGATACTAAGCAACTTGAAAGGAGTCTTGCAA
ATGATGTAGAACAGATTGCTGCTGAAGTTTCTAAAACTGTTGTCCTTGACTGTGAGTTGTATTC
AGCCATACATGTGCAAAGAAGTCCAACAACTATCAAGTTTGGTTCAACACATGGAAAAAATGTT
GTTGAAGCTGTGTCGACTGCAGTTCAGCAATCTCAGCATCTGAGGAATATTCTTCCTGTCGGTG
TCATAGTTGGTGTAACTTTGGCATGTTTGAGAAATTACTTCCATGTTGGTGTCTCTAAGCATGG
TGACCATATGATAGCCACTATGAAGTCAGATATTTTTGGTGAGGAAGTTATTGTTCAGGACAGC
AGCAAAGAGAATGTTCAGGATAGTGGAAAAGCAAATACAAACGATAATAATATTGAAAAAACCA
GTGGGGAGAACCAGCAGGATATGACGAAGTCACAGGGTCAAGATATGATGGTCGGGGCTGTGAC
GGCTGCCCTAGGTGCTTCTGCTTTGGTAGCACATCAA

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.104966412
Functional Information
Coding potential Y
Potential coding position 124327640-124324135(+)
Potential amino acid sequence MYVKLLTSYIFVSCYKVLVAVEQGETLVKALEEAVPEDVRGKLTASVTEILHSKRETFSLGALN
RLGWNNVRPTTTKTLAQEKLKDSDHESGLKDTKMVDQNRISATAFEGDLKDINMTNDDKPGESI
ESSQGKPSQTSEPVGTATEIGTEQPYKSDKANYGTNDSSEGQHITEQDNEMTPKQVSDDQSVAN
CNGPSKEREQSADATTDQNLQSNTTTEKEGDTSRTGEDKTAHNVNDQSTQVSKTEESKPSPITV
TQALDALTGFDDSTQMAVNSVFGVLENMIDQFEKQQDSENGESADGNDGITSVDETESHVKENT
ENVSSGEDINHSSKQPEGSSPGKTDSIMSKYDCAFGEENPNLSIVSYGRGKMRYYRGNKVGDHV
GADGIERVSGLPDYLLDIAVNSYLKAQYAMYLREFLYTELQLKSPESNSATDLFLDPQEGKWKI
EEQMGNVQNDNFESSQESSKMDNAIEPPYFIPGKNPDIAYKSNKWNNTVATRSKPGNDLNEALT
HFVRDELSSALKIEVGRKIGITDTKQLERSLANDVEQIAAEVSKTVVLDCELYSAIHVQRSPTT
IKFGSTHGKNVVEAVSTAVQQSQHLRNILPVGVIVGVTLACLRNYFHVGVSKHGDHMIATMKSD
IFGEEVIVQDSSKENVQDSGKANTNDNNIEKTSGENQQDMTKSQGQDMMVGAVTAALGASALVA
HQVIYSS*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020; Ma et al., 2021b