Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d020602_circ_g.1 |
ID in PlantcircBase | zma_circ_009363 |
Alias | Zm07circ00066, zma_circ_0002399 |
Organism | Zea mays |
Position | chr7: 124324121-124329756 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d020602 |
Parent gene annotation |
alpha/beta-Hydrolases superfamily protein |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d020602_T046:1 Zm00001d020602_T038:2 Zm00001d020602_T004:5 Zm00001d020602_T011:5 Zm00001d020602_T031:5 Zm00001d020602_T019:5 Zm00001d020602_T030:5 Zm00001d020602_T034:5 Zm00001d020602_T001:5 Zm00001d020602_T040:1 Zm00001d020602_T014:6 Zm00001d020602_T002:5 Zm00001d020602_T012:4 Zm00001d020602_T037:5 Zm00001d020602_T039:2 Zm00001d020602_T027:6 Zm00001d020602_T003:5 Zm00001d020602_T045:1 Zm00001d020602_T020:5 Zm00001d020602_T022:4 Zm00001d020602_T024:6 Zm00001d020602_T005:4 Zm00001d020602_T021:4 Zm00001d020602_T009:5 Zm00001d020602_T006:5 Zm00001d020602_T026:4 Zm00001d020602_T016:6 Zm00001d020602_T018:5 Zm00001d020602_T035:5 Zm00001d020602_T007:6 Zm00001d020602_T025:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.104966412 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
124327640-124324135(+) |
Potential amino acid sequence |
MYVKLLTSYIFVSCYKVLVAVEQGETLVKALEEAVPEDVRGKLTASVTEILHSKRETFSLGALN RLGWNNVRPTTTKTLAQEKLKDSDHESGLKDTKMVDQNRISATAFEGDLKDINMTNDDKPGESI ESSQGKPSQTSEPVGTATEIGTEQPYKSDKANYGTNDSSEGQHITEQDNEMTPKQVSDDQSVAN CNGPSKEREQSADATTDQNLQSNTTTEKEGDTSRTGEDKTAHNVNDQSTQVSKTEESKPSPITV TQALDALTGFDDSTQMAVNSVFGVLENMIDQFEKQQDSENGESADGNDGITSVDETESHVKENT ENVSSGEDINHSSKQPEGSSPGKTDSIMSKYDCAFGEENPNLSIVSYGRGKMRYYRGNKVGDHV GADGIERVSGLPDYLLDIAVNSYLKAQYAMYLREFLYTELQLKSPESNSATDLFLDPQEGKWKI EEQMGNVQNDNFESSQESSKMDNAIEPPYFIPGKNPDIAYKSNKWNNTVATRSKPGNDLNEALT HFVRDELSSALKIEVGRKIGITDTKQLERSLANDVEQIAAEVSKTVVLDCELYSAIHVQRSPTT IKFGSTHGKNVVEAVSTAVQQSQHLRNILPVGVIVGVTLACLRNYFHVGVSKHGDHMIATMKSD IFGEEVIVQDSSKENVQDSGKANTNDNNIEKTSGENQQDMTKSQGQDMMVGAVTAALGASALVA HQVIYSS*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b |