Detail information of Os04g0492100_circ_g.1


General Information
CircRNA Name Os04g0492100_circ_g.1
ID in PlantcircBase osa_circ_041798
Alias NA
Organism Oryza sativa
Position chr4: 24585318-24586274  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os04g0492100
Parent gene annotation Similar to H0425E08.1 protein. (Os04t0492100-01)
Parent gene strand +
Alternative splicing Os04g0492100_circ_igg.1 EPlOSAG00000040437_circ_ig.1 Os04g0492100_circ_g.2 Os04g0492100_circ_g.3 Os04g0492100_circ_g.4 Os04g0492100_circ_g.5 Os04g0492100_circ_g.6
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0492100-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAATTTGCAGTGCACTGAGGAAGCTCATCGTCCGGTAGACTGTGCCACTGTTTCAAAGTGGAT
CCTCAAGAACAGTGCGGAGTCTGAAAATATGAACTGttgacatgtggaatttgtttcgaaaatt
gtcctcgtacgtcaatgagtgctgctgcatgtggccatccgttctgtagtgcatgttggagagg
tttgacaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 458
Transcript exons: 24585318-24585408,24585499-24585671,24586009-24586113,24
586186-24586274
TTGACATGTGGAATTTGTTTCGAAAATTGTCCTCGTACGTCAATGAGTGCTGCTGCATGTGGCC
ATCCGTTCTGTAGTGCATGTTGGAGAGGTTATATTAGCACTTCTATAAATGATGGTCCAGGATG
CTTGATGTTAAGATGTCCTGATCCGTCCTGCACAGCTGCTGTTGGTCAAGATATGATCAATTCA
CTGGCTGATGACGAGGATAGGGAAAAGTATGGGCGATATCTTCGCAGATCTTACATTGAAGATA
ATAGGAAGACAAAATGGTGTCCTGCTCCTGGATGTGAATATGCTGTAGAATTTGTCATGGGCAG
TGGTAGCTATGATGTGAACTGCAACTGTTCATACGGCTTTTGTTGGAACTGCACTGAGGAAGCT
CATCGTCCGGTAGACTGTGCCACTGTTTCAAAGTGGATCCTCAAGAACAGTGCGGAGTCTGAAA
ATATGAACTG

Genomic sequence TTGACATGTGGAATTTGTTTCGAAAATTGTCCTCGTACGTCAATGAGTGCTGCTGCATGTGGCC
ATCCGTTCTGTAGTGCATGTTGGAGAGGTTTGACAATCTAACCTTGAGATATTTCTCTTTATCA
ACCCCGGATTCTGTTTTGTGTGGGATCACCACTTACATAGTGCACATTGACAGGTTATATTAGC
ACTTCTATAAATGATGGTCCAGGATGCTTGATGTTAAGATGTCCTGATCCGTCCTGCACAGCTG
CTGTTGGTCAAGATATGATCAATTCACTGGCTGATGACGAGGATAGGGAAAAGTATGGGCGATA
TCTTCGCAGATCTTACATTGAAGATAATAGGAAGGTAGGTTGATCATAATACAAATGAATAAAT
GAAAATCTGTATGGCTGCTACTGTGAATTATTATATGTTTTATGTAAACCAGCCATTCTCCTGC
CTTTGCATCTTGTTTTTCCTAAAAATGGAGTGAACTCTCTGTATTTTGAATAAACCTTGATGTT
CTTACAGTTAATGTGGCAATCATAATATATTTTTGAAATGGTGCTGACAGTTTGTAATTAGTGT
GAATGCCTTCATAGGAAATGATCAAGTGCTATATTTGGCCAATTCTCAAGTTTTGGTATTTATG
TATCTATTTTTTTAAGCATATGTTCATTAAGTTCATTCCTATTTGGAACAGACAAAATGGTGTC
CTGCTCCTGGATGTGAATATGCTGTAGAATTTGTCATGGGCAGTGGTAGCTATGATGTGAACTG
CAACTGTTCATACGGCTTTTGTTGGAACGTGAGTACTGGACCTGCCATTTCATTTCATTGTGAT
CAGCAGGGCATAAACCATTTGAAATAAAATTTGCAGTGCACTGAGGAAGCTCATCGTCCGGTAG
ACTGTGCCACTGTTTCAAAGTGGATCCTCAAGAACAGTGCGGAGTCTGAAAATATGAACTG
Conservation Information
Conserved circRNAs NA
PMCS 0.220225374
Functional Information
Coding potential Y
Potential coding position 24585361-24585318(+)
24585401-24586230(-)
Potential amino acid sequence MSAAACGHPFCSACWRGYISTSINDGPGCLMLRCPDPSCTAAVGQDMINSLADDEDREKYGRYL
RRSYIEDNRKTKWCPAPGCEYAVEFVMGSGSYDVNCNCSYGFCWNCTEEAHRPVDCATVSKWIL
KNSAESENMNC*(+)
MHYRTDGHMQQHSLTYEDNFRNKFHMSTVHIFRLRTVLEDPL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study