Detail information of Os06g0132801_circ_g.1


General Information
CircRNA Name Os06g0132801_circ_g.1
ID in PlantcircBase osa_circ_042249
Alias NA
Organism Oryza sativa
Position chr6: 1762075-1762170  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os06g0132801
Parent gene annotation Hypothetical conserved gene. (Os06t0132801-01)
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os06t0132801-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCACTGTCATGCTCCTCCCCTCGCCCGTCGCCGCGCACCACCACCACaccatcctccgccacc
gcctaccaccgccgcctcctattgcattgctc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 96
Transcript exons: 1762075-1762170
ACCATCCTCCGCCACCGCCTACCACCGCCGCCTCCTATTGCATTGCTCCTCACTGTCATGCTCC
TCCCCTCGCCCGTCGCCGCGCACCACCACCAC

Genomic sequence ACCATCCTCCGCCACCGCCTACCACCGCCGCCTCCTATTGCATTGCTCCTCACTGTCATGCTCC
TCCCCTCGCCCGTCGCCGCGCACCACCACCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.124131944
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study