Detail information of 1_circ_ag.7


General Information
CircRNA Name 1_circ_ag.7
ID in PlantcircBase ath_circ_009952
Alias NA
Organism Arabidpsis thaliana
Position chr1: 27558625-27561808  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.3 1_circ_ag.4 1_circ_ag.5 1_circ_ag.6 1_circ_ag.7 1_circ_ag.8 1_circ_ag.9 1_circ_ag.10 AT1G73280_circ_g.1 1_circ_ag.2 1_circ_ag.3 1_circ_ag.4 1_circ_ag.5 1_circ_ag.6 1_circ_ag.8 AT1G73300_circ_g.1 1_circ_ag.2 1_circ_ag.3 AT1G73310_circ_g.1 AT1G73310_circ_g.2
Support reads 4
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTTAGCCAGAGAATAAGAGGGTCTTCTTTTGGGTTCCTCTCAGACTTGATGAAGTAGTAGAAC
AGTTGCACTTCCTCTTCCTCACCAATACCAATATACccggtttcgagctcaaagggaagagacc
cttcaaaaccaggaagaaacttgacgatagaggcagaatcaacatgctgctgaatcaagaagac
aagatgaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 614
Transcript exons: 27558625-27558762,27559621-27559753,27561037-27561182,27
561612-27561808
CCGGTTTCGAGCTCAAAGGGAAGAGACCCTTCAAAACCAGGAAGAAACTTGACGATAGAGGCAG
AATCAACATGCTGCTGAATCAAGAAGACAAGATGAAGAAGCAGAAGCAGCGACTTCAAAACAGA
GGAAATGTAGCTAGAATCGTATTTTCTTTTCCTTTATACGTTAAGGCAGGTACTCCCCTCTTTT
AGAGAGGTTGGCCATTGATCCATCTTTGAAACATGATAGAGGCTTCCTCTGGTTTAAACTCTAT
TGTGTGCCCACCTCCAAAAGGGCTTGTGGGATTGATATTAAAAATACCATATATACCTTTTGAG
ATTTCTTGAACGGTAGCGGGAACAACCAAACCGGAATAAGAATCTCCGGCAACATAGAAAGGGT
TGGAGGAAAACTCTTGATGCTTGCCTAGCCACTTGACTAATCAGAGACGCATAAGAAGGAGTTT
ATCAATGTTTTCGATTTCACCATTCTCAAAAAGAAGGCCAGAGATGGAAGAGCAGCCAGGTCCT
CCAGTTAGCCAGAGAATAAGAGGGTCTTCTTTTGGGTTCCTCTCAGACTTGATGAAGTAGTAGA
ACAGTTGCACTTCCTCTTCCTCACCAATACCAATATAC

Transcript length: 745
Transcript exons: 27558625-27558786,27559615-27559753,27559847-27559868,27
561076-27561182,27561270-27561395,27561620-27561808
CCGGTTTCGAGCTCAAAGGGAAGAGACCCTTCAAAACCAGGAAGAAACTTGACGATAGAGGCAG
AATCAACATGCTGCTGAATCAAGAAGACAAGATGAAGAAGCAGAAGCAGCGACTTCAAAACAGA
GGAAATGTAGTTAGCCATTTCTTTTCAAGTTTCTGTGTTACTAGAATCGTATTTTCTTTTCCTT
TATACGTTAAGGCAGGTACTCCCCTCTTTTAGAGAGGTTGGCCATTGATCCATCTTTGAAACAT
GATAGAGGCTTCCTCTGGTTTAAACTCTATTGTGTGCCCACCTCCCTTTTATAGTAGCAAATGT
CATACCTTTTGAGATTTCTTGAACGGTAGCGGGAACAACCAAACCGGAATAAGAATCTCCGGCA
ACATAGAAAGGGTTGGAGGAAAACTCTTGATGCTTGCCTAGCCACTCTTTTGAAGAAACTCATG
GATCCGTTTGGCTTCTCCTGAATCACTAGGTTTATTAAATTGTTGAGTTCTTGAATAGGAAAAG
CCAGTTCCAACAGGCTGATCCAAGAATATCATGCTCGAAGTCTGCAGAGACGCATAAGAAGGAG
TTTATCAATGTTTTCGATTTCACCATTCTCAAAAAGAAGGCCAGAGATGGAAGAGCAGCCAGGT
CCTCCAGTTAGCCAGAGAATAAGAGGGTCTTCTTTTGGGTTCCTCTCAGACTTGATGAAGTAGT
AGAACAGTTGCACTTCCTCTTCCTCACCAATACCAATATAC

Genomic sequence CCGGTTTCGAGCTCAAAGGGAAGAGACCCTTCAAAACCAGGAAGAAACTTGACGATAGAGGCAG
AATCAACATGCTGCTGAATCAAGAAGACAAGATGAAGAAGCAGAAGCAGCGACTTCAAAACAGA
GGAAATGTAGTTAGCCATTTCTTTTCAAGTTTCTGATTAGCAATAATATATGGCTTGAAAATTA
TTGCATTTTTATACTAAAACCCAAAACAAAAGTCGCCTACCAACTATATATCATTCAATTCTGG
CTAGATGACCAACCTTGTCGCATTCTTTTATCGGAAAATCTCGCAACCTTGATCCTCACACCTC
GTAGATAATACAAAGTTATTTGTTCATCATCCTCGTTTTTCACGATCACGATTATATAAGCTTA
TTGAGGCATAATCAACATGGATCTGACCCAAGAATACAAGGTAAATTAACAGAAGCAGCGACTT
CAGAACAGAGGAAACGTAGTTGTTTGCCATTCCCTGTTTCGGATTCTGGTTAGCAATGTCTTTA
CGGACAACAATTACTACATCTTTATACTAAAACCCAAAAAAGTCGCCTACCAAACTCTTATCTT
TTAGTTTTGGCTTCTTCACCAACGTTGTCCCATTTTTTCATGGATAAAAATATTAAAATCTCGC
AATCTTGATCCTCACTCCATGTATAAAATTACTAAACAACAAAACTATGTTAAAGAATAAACCG
CGATCATAACAAATTAATTATACTACTGTATAATATTTTAGTTTAAAACATTTTATGATAACCA
TATATATAACTTTAATTTAGCTCTATAATTGTGATACTTATTGATACAATATATGTAATTTAAC
TTTTGCATCAAACAAATAGAAAACAAGCTTGCTGAAAAAAAAAAAGGTGAAATGCAACTATACC
AAGATTGTGGAAAAGCAACACACATGTTGCTTACAAATTATGAGTTTAAATTCTATTCATTTAT
AAGGCCAAGGGTTCTTATATATATTTGGATGTGTTACTAGAATCGTATTTTCTTTTCCTTTATA
CGTTAAGGCAGGTACTCCCCTCTTTTAGAGAGGTTGGCCATTGATCCATCTTTGAAACATGATA
GAGGCTTCCTCTGGTTTAAACTCTATTGTGTGCCCACCTCCCTATAATCAAAACCCACACATCT
CAATACAAGTTAAAAAAATCCGCAATTAAAATGTATTCGAGTGGATAAAATAGGAAAGAAGAAA
GACTTGCTTTTATAGTAGCAAATGTCATTTTGTTGGCATAAGTCCTTGTGTACCTGCCAAGCAA
GAGAGTCAAGAGTGAATTTCAAAGTGAGTCTCCTATAGGGAAAGAATAAAAAAAGAATCCATTT
ACATACCCAGCGATTTGATTTTTGATCATCCATGGCCTCCAGTCATCAATAATTGAATAGTTGA
GAGATCTTATCCAAGCTTGAGTTCCAAGGTAAGGTACTTCCAAATCATGATCACCACTATTCAC
CAAAAACCGCAAAAGTTTTAGTCTTGAATCTTGTTAGGGACAAAACAAGTGTTAAACTCTCACC
TGTAGATGAGAGAACGATAACCACTGATGCTGTTATTCACATGGTAAGGCATGCTACTTTTAAT
GTCATTATCGTAAGGAATAGTGCGATAACATCGTACCCATTCCCCTATACTCTCCTGCATGAAT
GAAATCATATATCCTCCTATCAGAAGGACTCTGTTCCTTTACCAAGAACCTTAAAAATAAATTT
GGTACCTTATTGATTTGAAGAGCTTCGCGCACAGTCGCGTCATTGGCCCAGTAGGTAGTTAGCA
AATACCGATAAATCTGCAAAAGTATACAAATTCCTTTTCTCGAATACCGATAAATCTACCAAAG
TATAACAGAGAACATTTAGATATATAGATTACTTTCATAGCAATCTGGAGTTTCAGTTTCGCAC
AACGGATCTAGTATAAGTTGTTGGAGTATTCTGTTTGTACACTAAAATGAAATAACCACACACA
AAAAAAAAGTGTCTGAACTCTGAATTTAGTGATCATGAACCTTTTTATTTACTAAAGGCGCTAG
AGTGTGTAAACCTTATTAAATTCTTCAATGAATTTCAAGCATTGTGTGTTACGTGGATGAACAT
TTGTATATTCTCCTTTACAGGTTTTCTTCAACGACTGCGAACCAAATAGTATTTTTTTAAAACC
GCTTTCGTTGTAAGGACAAGAAAAAAGAAGCAAATGTCATGCATGTTTCATACCTCGTAGAGTT
CATCAGATATCAGTGCCATTCCATGGGCAAATGGAATGCGGCTGTTACTATCAATTGCATAGTC
TGTTAACGGATTACCAAGCACATAGCCCTGAAGGTTTATTGGAGGATTGCAGCATTCATAGTTT
CCTGCATCATCATGCATGATTTTTTGTTATAATAATTGATTGAGAAAAGGGCTTGTGGGATTGA
TATTAAAAATACCATATATACCTTTTGAGATTTCTTGAACGGTAGCGGGAACAACCAAACCGGA
ATAAGAATCTCCGGCAACATAGAAAGGGTTGGAGGAAAACTCTTGATGCTTGCCTAGCCACTGC
ATAAACAACAACAACAATAAATATAGAAAAAGGCTCCTAGTTTCTCCATGCACAAAGAAACGTT
GCATCAAGATTTGCCATTTACCTTTTGAAGAAACTCATGGATCCGTTTGGCTTCTCCTGAATCA
CTAGGTTTATTAAATTGTTGAGTTCTTGAATAGGAAAAGCCAGTTCCAACAGGCTGATCCAAGA
ATATCATGCTCGAAGTCTGAGGAAAATGATGATCAAGAATATATTGAATATTGGGTTTTGCTGA
TCGTCATATCAAGAATACACACACTTTTTTGTATTACCTTTGTCCAAGAATATGTAGTAGAGAC
CAAAGAAGGGAGAGTTCCATTGTAAACGTCAAGCTTCATAGTTAGAGGCCCTGCTTATACACAT
ATATATATATATATATATATATATATATATATATATATATAATTGACTAATCAGAGACGCATAA
GAAGGAGTTTATCAATGTTTTCGATTTCACCATTCTCAAAAAGAAGGCCAGAGATGGAAGAGCA
GCCAGGTCCTCCAGTTAGCCAGAGAATAAGAGGGTCTTCTTTTGGGTTCCTCTCAGACTTGATG
AAGTAGTAGAACAGTTGCACTTCCTCTTCCTCACCAATACCAATATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.38466659
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017