Plant Circular RNA Database

Detail information of Os02g0795900_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0795900_circ_g.1
					
						ID in PlantcircBase
						osa_circ_016936
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 33839652-33841464  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0795900						
					
						Parent gene annotation
						
							Similar to DEAD box-like RNA helicase (Fragment). (Os02t0795900-
01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0795900-01:5

General Information
CircRNA Name	Os02g0795900_circ_g.1
ID in PlantcircBase	osa_circ_016936
Alias	NA
Organism	Oryza sativa
Position	chr2: 33839652-33841464 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0795900
Parent gene annotation	Similar to DEAD box-like RNA helicase (Fragment). (Os02t0795900- 01)
Parent gene strand	-
Alternative splicing	NA
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0795900-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAGTTGAGAAAGCTTGCTAGGATCTTGAGTCAGTGTGGCAGACAAAACTATCTTCGCCAATCTT
GGAAAGGATTTACCTTTAAAACCACGCTCAACACCCcaaatctatgtagcagatgcagatacat
catacaaagaataaattagaacttcaactaatctatactgcttcacgtattgatggttctcttt
cttttaga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 854
Transcript exons: 33839652-33839828,33839929-33840034,33840521-33840725,33
840970-33841157,33841287-33841464
CAAATCTATGTAGCAGATGCAGATACATCATACAAAGAATAAATTAGAACTTCAACTAATCTAT
ACTGCTTCACGTATTGATGGTTCTCTTTCTTTTAGAAGCATTAGGCGCTTTATCTCCCGACTTA
GATTTCTTTGTTGCTTCTGATTCAAGAGACTCTTCCAATTTCTTTAGAGCAGAGGAAAAAACTG
GGCGAAGGGTTTCTACCGATTCCTCTGGTAGTGAATGAAGACTGCAGCTAGAATTATCTGCCTT
CTTGAGCATTTTGTCAAAAGCCTTAACCTCATGTTTCCTTAAAAATGTGAAGCAAGAACCAGAC
TCTCCCGCCCGAGCAGTACGACCTGCTCGGTGGATGTATGTTTTTACATACGGTGGCATGTCAT
AATTGATAACATATCTTAAGCCATCAATATGAATTCCTCGAGCCATTCTATCTGTACCAATCAG
AACATCTATCTTCCCTTCCTTGAAGGCATCCAGTGTCTTCCTCCGAGTCGATTCACGTTGCAAA
CGTGAATATTCACTAAATTTGAAGGGCAAGTCTTCGAAAAATTCCAGCAAGGTGCTCAGTCTGT
GACTGGATTCCACAGATGAAGTAAAAACTAAACATTTTTCCCCACGCAGCTCTTGGAGAAGAAC
AATCAGAGATAGTGGTTTTAAATTTGATTTACAGACCAGCTTGTAGGACTGAAGCTTTGTTGGA
ATTCTGTAGCGCTTCTTTCCACTATTCAACAGCAAGGGATGTTGCAACTCAAGTTGAGAAAGCT
TGCTAGGATCTTGAGTCAGTGTGGCAGACAAAACTATCTTCGCCAATCTTGGAAAGGATTTACC
TTTAAAACCACGCTCAACACCC
						
					

						Genomic sequence
						
							CAAATCTATGTAGCAGATGCAGATACATCATACAAAGAATAAATTAGAACTTCAACTAATCTAT
ACTGCTTCACGTATTGATGGTTCTCTTTCTTTTAGAAGCATTAGGCGCTTTATCTCCCGACTTA
GATTTCTTTGTTGCTTCTGATTCAAGAGACTCTTCCAATTTCTTTAGAGCTTTGATCACCCAGT
CAGAAAAAAAAAGATTAAATTTAACACAAATCATATGAGTAATAATGCATTAGTGCATCTTAAA
CAAAACAGACTGCAACCTTACCAGAGGAAAAAACTGGGCGAAGGGTTTCTACCGATTCCTCTGG
TAGTGAATGAAGACTGCAGCTAGAATTATCTGCCTTCTTGAGCATTTTGTCAAAAGCCTTAACC
TGCAAAGACAGCCCAAATAAAAAGAAAAGAGTTAGAATGAGATTTTAGACTTATGGCACCTGCT
CTCAGTATTCAATTAGGCATTCTTTTAGTGAAATAAAGTAGAAAGGTTACACAGACCATAGTTA
TCCACACATCTGGACATATGTTGCAATAAAAAATAAGCATCAGGTGTTTTATGCATTGGTAAGT
CCTAAACCAAAACAGAAAGTCCCAGTGCTAGGTAATCGGTGGTGCCCCTTCTGTTTTCTACACC
ATATCAATTAGCGTCAATCTAACATATACCAAGTCAATAAATACTCAACTTCTTTTCTATGTTT
TTAAACATCACAAATACAGGCATGCGATTAATCTTTCATGTGCAAGCTTCCTACACATATAGTC
ATATCATGTAATTACCATGTCATATTAATAAAATCAACTCACTGTATATTATTGTACTAGAAGA
ACGGAAAACTACTTATAATTGTTCAGCAATGTATTACCTCATGTTTCCTTAAAAATGTGAAGCA
AGAACCAGACTCTCCCGCCCGAGCAGTACGACCTGCTCGGTGGATGTATGTTTTTACATACGGT
GGCATGTCATAATTGATAACATATCTTAAGCCATCAATATGAATTCCTCGAGCCATTCTATCTG
TACCAATCAGAACATCTATCTTCCCTTCCTTGAAGGCATCCAGTGTCTTCCTGCAAAAAATATG
TGTTGCTAATCCCGTAACTTATCATGGTGTGAATAAGTTCAACATACCAAAAATTACATCCTAT
CATCAACAGAAGTTACATAGGTCTTGCAGTTCAAACTTCAAATCCACATGATCCAGAAAATATT
ATGATCCATAGAACTTGAACAAGGAATGGTCAGCTAGATATGATATTTGCATACTATTTTTATG
TTGTCTATTTGCTAACAGCTCCATGAAACTGAACTTACCTCCGAGTCGATTCACGTTGCAAACG
TGAATATTCACTAAATTTGAAGGGCAAGTCTTCGAAAAATTCCAGCAAGGTGCTCAGTCTGTGA
CTGGATTCCACAGATGAAGTAAAAACTAAACATTTTTCCCCACGCAGCTCTTGGAGAAGAACAA
TCAGAGATAGTGGTTTTAAATTTGATTTACAGACCTGCAGGTGCAACGCATCATCAAGATGAAC
AAGAAAATACAGAATTTCCAAATAGACTTTTACACATTGGATGCACCAGCACTAAAGATGTAAC
GGCTAAAAATGTGCTACATAGAGATGAGGACAAACCAGCTTGTAGGACTGAAGCTTTGTTGGAA
TTCTGTAGCGCTTCTTTCCACTATTCAACAGCAAGGGATGTTGCAACTCAAGTTGAGAAAGCTT
GCTAGGATCTTGAGTCAGTGTGGCAGACAAAACTATCTTCGCCAATCTTGGAAAGGATTTACCT
TTAAAACCACGCTCAACACCC
						
					

			
		

Sequences
Splice junction sequence	AAGTTGAGAAAGCTTGCTAGGATCTTGAGTCAGTGTGGCAGACAAAACTATCTTCGCCAATCTT GGAAAGGATTTACCTTTAAAACCACGCTCAACACCCcaaatctatgtagcagatgcagatacat catacaaagaataaattagaacttcaactaatctatactgcttcacgtattgatggttctcttt cttttaga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 854 Transcript exons: 33839652-33839828,33839929-33840034,33840521-33840725,33 840970-33841157,33841287-33841464 CAAATCTATGTAGCAGATGCAGATACATCATACAAAGAATAAATTAGAACTTCAACTAATCTAT ACTGCTTCACGTATTGATGGTTCTCTTTCTTTTAGAAGCATTAGGCGCTTTATCTCCCGACTTA GATTTCTTTGTTGCTTCTGATTCAAGAGACTCTTCCAATTTCTTTAGAGCAGAGGAAAAAACTG GGCGAAGGGTTTCTACCGATTCCTCTGGTAGTGAATGAAGACTGCAGCTAGAATTATCTGCCTT CTTGAGCATTTTGTCAAAAGCCTTAACCTCATGTTTCCTTAAAAATGTGAAGCAAGAACCAGAC TCTCCCGCCCGAGCAGTACGACCTGCTCGGTGGATGTATGTTTTTACATACGGTGGCATGTCAT AATTGATAACATATCTTAAGCCATCAATATGAATTCCTCGAGCCATTCTATCTGTACCAATCAG AACATCTATCTTCCCTTCCTTGAAGGCATCCAGTGTCTTCCTCCGAGTCGATTCACGTTGCAAA CGTGAATATTCACTAAATTTGAAGGGCAAGTCTTCGAAAAATTCCAGCAAGGTGCTCAGTCTGT GACTGGATTCCACAGATGAAGTAAAAACTAAACATTTTTCCCCACGCAGCTCTTGGAGAAGAAC AATCAGAGATAGTGGTTTTAAATTTGATTTACAGACCAGCTTGTAGGACTGAAGCTTTGTTGGA ATTCTGTAGCGCTTCTTTCCACTATTCAACAGCAAGGGATGTTGCAACTCAAGTTGAGAAAGCT TGCTAGGATCTTGAGTCAGTGTGGCAGACAAAACTATCTTCGCCAATCTTGGAAAGGATTTACC TTTAAAACCACGCTCAACACCC
Genomic sequence	CAAATCTATGTAGCAGATGCAGATACATCATACAAAGAATAAATTAGAACTTCAACTAATCTAT ACTGCTTCACGTATTGATGGTTCTCTTTCTTTTAGAAGCATTAGGCGCTTTATCTCCCGACTTA GATTTCTTTGTTGCTTCTGATTCAAGAGACTCTTCCAATTTCTTTAGAGCTTTGATCACCCAGT CAGAAAAAAAAAGATTAAATTTAACACAAATCATATGAGTAATAATGCATTAGTGCATCTTAAA CAAAACAGACTGCAACCTTACCAGAGGAAAAAACTGGGCGAAGGGTTTCTACCGATTCCTCTGG TAGTGAATGAAGACTGCAGCTAGAATTATCTGCCTTCTTGAGCATTTTGTCAAAAGCCTTAACC TGCAAAGACAGCCCAAATAAAAAGAAAAGAGTTAGAATGAGATTTTAGACTTATGGCACCTGCT CTCAGTATTCAATTAGGCATTCTTTTAGTGAAATAAAGTAGAAAGGTTACACAGACCATAGTTA TCCACACATCTGGACATATGTTGCAATAAAAAATAAGCATCAGGTGTTTTATGCATTGGTAAGT CCTAAACCAAAACAGAAAGTCCCAGTGCTAGGTAATCGGTGGTGCCCCTTCTGTTTTCTACACC ATATCAATTAGCGTCAATCTAACATATACCAAGTCAATAAATACTCAACTTCTTTTCTATGTTT TTAAACATCACAAATACAGGCATGCGATTAATCTTTCATGTGCAAGCTTCCTACACATATAGTC ATATCATGTAATTACCATGTCATATTAATAAAATCAACTCACTGTATATTATTGTACTAGAAGA ACGGAAAACTACTTATAATTGTTCAGCAATGTATTACCTCATGTTTCCTTAAAAATGTGAAGCA AGAACCAGACTCTCCCGCCCGAGCAGTACGACCTGCTCGGTGGATGTATGTTTTTACATACGGT GGCATGTCATAATTGATAACATATCTTAAGCCATCAATATGAATTCCTCGAGCCATTCTATCTG TACCAATCAGAACATCTATCTTCCCTTCCTTGAAGGCATCCAGTGTCTTCCTGCAAAAAATATG TGTTGCTAATCCCGTAACTTATCATGGTGTGAATAAGTTCAACATACCAAAAATTACATCCTAT CATCAACAGAAGTTACATAGGTCTTGCAGTTCAAACTTCAAATCCACATGATCCAGAAAATATT ATGATCCATAGAACTTGAACAAGGAATGGTCAGCTAGATATGATATTTGCATACTATTTTTATG TTGTCTATTTGCTAACAGCTCCATGAAACTGAACTTACCTCCGAGTCGATTCACGTTGCAAACG TGAATATTCACTAAATTTGAAGGGCAAGTCTTCGAAAAATTCCAGCAAGGTGCTCAGTCTGTGA CTGGATTCCACAGATGAAGTAAAAACTAAACATTTTTCCCCACGCAGCTCTTGGAGAAGAACAA TCAGAGATAGTGGTTTTAAATTTGATTTACAGACCTGCAGGTGCAACGCATCATCAAGATGAAC AAGAAAATACAGAATTTCCAAATAGACTTTTACACATTGGATGCACCAGCACTAAAGATGTAAC GGCTAAAAATGTGCTACATAGAGATGAGGACAAACCAGCTTGTAGGACTGAAGCTTTGTTGGAA TTCTGTAGCGCTTCTTTCCACTATTCAACAGCAAGGGATGTTGCAACTCAAGTTGAGAAAGCTT GCTAGGATCTTGAGTCAGTGTGGCAGACAAAACTATCTTCGCCAATCTTGGAAAGGATTTACCT TTAAAACCACGCTCAACACCC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_004374* 						
					
						PMCS
						0.231152326

Conservation Information
Conserved circRNAs	osi_circ_004374*
PMCS	0.231152326

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							33841354-33839695(+)
33839684-33841414(-)
						
						Potential amino acid sequence
						
							MLQLKLRKLARILSQCGRQNYLRQSWKGFTFKTTLNTPNLCSRCRYIIQRIN*(+)
MMYLHLLHRFGVLSVVLKVNPFQDWRR*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	33841354-33839695(+) 33839684-33841414(-)
Potential amino acid sequence	MLQLKLRKLARILSQCGRQNYLRQSWKGFTFKTTLNTPNLCSRCRYIIQRIN(+) MMYLHLLHRFGVLSVVLKVNPFQDWRR(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0795900_circ_g.1

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