Detail information of Os03g0236966_circ_g.1


General Information
CircRNA Name Os03g0236966_circ_g.1
ID in PlantcircBase osa_circ_018758
Alias NA
Organism Oryza sativa
Position chr3: 7213824-7217392  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os03g0236983
Parent gene annotation Hypothetical gene. (Os03t0236983-01)
Parent gene strand -
Alternative splicing Os03g0236966_circ_g.2 Os03g0236966_circ_g.3
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0236966-00:10
Os03t0236983-01:10
Os03t0236966-00:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTATTTGTTGAAATTGTTTTCTATTTCAGATGTCATCTGCCAACTTTATACATGGGCATGCAA
TATTTGCGAATGCACAATTTCAAACTTGCAGAGCAGgaggagttgaaagaatggcatcagtgtt
tgatcatacttggagatgcaaaaatagatgagcatggaaacgttgttgatcaggatgatggcag
tgacattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGGAGTTGAAAGAATGGCATCAGTGTTTGATCATACTTGGAGATGCAAAAATAGATGAGCATG
GAAACGTTGTTGATCAGGATGATGGCAGTGACATTTACTTTGATAAGGATGCTGAAGACCATGA
GATCAATGTGTGTTGACTCTTCTTTCTCTTCCCCATGCCTCTCTCTCTCTCTCTTAGTATGGTG
ATTGATAGTAATATTTGCTTGCCAGATCAAAGCGGCAATATGTTTTTTACGTGGCAAGGCATAC
GAAGCACTGGACAACTGTGACCTTGCTCGACAATGGTAAAGCATCATTTCATTTTTTGTCTAAT
TGAGTGTATTCAGTGGTTCTGGTGAATGACGATGCAGTTATTTTGAAGTCTTTCTTCTCTTACA
CCTTTTACTCAATATCTTCACTGAGAATGTTGGGTTATTCGATACTCTTTAGAAGATATAAAGA
AAATGAGTTTTTCTTGTAAAACGAGGACACACTGCTAATAGTTGAAATAACTGTTGCTACCTGG
AAGTACTGCTAATTTTCTTTGTTTGAAATTAAGATTTAAGCAGGATTGTCTAATCAGTGTTTTT
TTTTGGGCATATCTGGCCAAATAGCTTGGTTAAGATGGTTTTATGGCTTTGTTCTGCTGTTATC
TCAGGTACAAAGCTGCAGTGAAGGCTGATCCTTTGTGCTATGAGGTGAGAAGAATCATGTGACT
CTTTAGTACAATACCTTTTCAATTACATGAACCACCATTATTTTGTATTTTTGGTTCTACTAAA
TATGGAATTTGGCATCCAGATGCTAACATGGAATTGGGCCTCTGTGGTAACCCCAGTTAGTTCA
TTCCTAACTTCTTATGTCTGTACATGGCAGGCCCTTGAATGCCTTGTTGATAACTACATGTTGA
CATGCGAGGAAGGTAAGTTTTACAAAATCAATCTTCCCATCTGTCATGTCCATCCTCTTAGGAT
ATTTCTTTTAAATAATACAATGTTTATTGTTATTACTGGACTAGTTTTAAGAAGATATGCTTAA
TGTTGGACCTTCAATCCTCTCTTTGTTCTTGGTACTTATTGTTATGCAATGATATCAGAATCTG
AGCTATTGTCCTCTCTAAAATTTGGAAAAGAAGATGGGTGGCTCTCAGCATTCTACTCTTGTTT
GATAAGGAAGGTACACGACTTATTAACTGCATTGCTTTGCAATTTAATAAACAATATGTGTATC
TGCATTCACTTATATTTCTTTTGATCATGGTTTGTTTTGTTTTATGGCTTTAGCATGAAAAAGA
ATATATAGTGGAAGCAAAGTTCAAGGAATTTGAACGAGAATCTTGTAGTATTTCATCTTTGAGT
TCAGGACTGACACTGAAAAATAATATTGACGTGTTGGCTTGCAAAGCTGAATACTATCATCAGA
GTGGAGAGTACCAAAAATGTTTCGAACTCACATCTGCGTAAGTTGGTAAATGATTCATTGTCGG
TACATATGTTTCCTTGATCAATATTGGTTTATCATTCTTGTGATGCTATATGTGCCTCAGGTTA
CTTGAAAGGGACCCTTTTCATTTGAAATGCACGTTAGTTCATTTGGCAGCTGCAATGGAGCTTG
GCCATTCAAATGACCTTTATATTTTGGCCTGCAATCTAGTGAAGGACTATCCTCAGAAGTGAGT
ATTCCCACTGGCCTGCCCACATTCAGACCCACATAATATTTGTTATCCTGCTAGATGGGCTTTT
CCCCCTTTCATTTGCATGTAACAATCTTAGATATAATGACAGTGTTGTGCACATTATTCATCTT
TCTGCAAACTTTAATGCAACTTGTAAAATCTAGCCTTTAATAGCATCGGGATTGGGGTAAAATA
TGTTAACTGACCTTTATTTATGTGATGAACAAGAAGAGATTGACCCCCCCCCCCCCCCTTCATG
TTGGTTATATAGACTCCAATAGTTGGAGGGACATAATACTAAAGTACACTTGATTGTTTGTAGT
CAGACATGAGCAAACAAAGTATATTATTTTAATGTCAGCTGTGGTTCCATCTGTAGAGCTCTTT
CCTGGTTTGCTGTTGGGTGTTATTACTACTGTATTAAGAAGTATGATCAAGCACGCAGATACTT
TGGGTAAGCATATTCTTCTCTTAATTTCTACTGTATTATTTTTATTTGAACCTTCACTATGCAT
TTTTGCCTTAGGATAGCTTAGAAGATAATCCTGCTGTGCCTTCGATGTTGGGATGTAAAATAAA
ATAGGGTGTGATTAGTGAATATCCTCTGCACTGCAAATCACAACCATGTTCCTGCGTAAGGCAA
CACTTTTGTCATGAAAACATGGCAGACATGGTATAACATGTGTGCTACAATAGTGTTACCATCT
GATGGAGAGAACAGTGTCCATAGGTGCCATTGCCTCCTGAAATCTACGCATATCCAACTGACTG
ATTGATTTCTTATAACAAACAATATATTTCTTTGTTAAATATTTTTAGTTGTCTGGAATGATAG
AACAATGTGATAAAAAGACAGAAATGAGTAGGTTCTACTCATGTAGTATCAGTCTGTCAGATGG
TTTGTAAGGTGAAACATATCTGTCCAATAATTCTCCAGAGTCCAAGTTCAAATAAACAATATAT
ATTTTCTTAAGACATGTGTCTCAGTTATACCAGTCCAAAGGTTGCAGGTTATTTTGTTTCTTAT
TTGTTCAATGCTCATTGTTCATTGAATTTAATCATGGATGGGTTTAACCCTCTTACAACTTCTT
ATACCTTGTATTCTTGTTCAATTTTAAGTAGCTGTAATATGTTTTGCACTAATATATTTCCTAT
CAGCAAAGCTACAGGGTTAGATGGGACATTTCCTCCTGCTTGGATTGGTACTGGTATTGCTTAT
GCTGCACAGGAGGAGGGTGATCAAGCAATGGCTGCATTTCGGACAGCAGCTCGGCTATTTCCTG
GGTCAGTAATTCCTTTCGAAGTAATTGTTTGTGTAAAAAAACTTCTTTATTTGTTATGTTATTA
TGCTGTGTACAGTTTAGCAAAATATTAATTAAATTAATTTGATTCTTTTTACACTTAAGTCAAC
TCAATATTAACACCAGAGCATACTTGTACTTGTTTGTCTAAGGAGCAATTATCTTAACACAATT
AGTTGCATTAATTTTCCTTTGTACTATCTTTCAATTGTTTTGGCCTTTTATTCTGGAAATTGAT
ATTCGTATTTTTTTTGGGTGTGACAAGCTTTTGTATCTGCTATGCATTACCGATTATGAGCATT
GTGGATCCTTTCTACTTTCTTTCATTTTTTGGCCTTCTGTTCTGGAAACTGCTATTCGTGTTTT
TTGGGACACTGGCAAGCTTTTGTATCTACTACACATTACTGATTATGAGCATTGTGGATTGAGT
TCCTCTCTTTGTTTTGGAGTGTAGATTCTTGTTGCACTTCAATTACTTCACCTCTGTTGTTGTC
TGTCCTTCGGCTCACTATTTGTTGAAATTGTTTTCTATTTCAGATGTCATCTGCCAACTTTATA
CATGGGCATGCAATATTTGCGAATGCACAATTTCAAACTTGCAGAGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.10726892
Functional Information
Coding potential Y
Potential coding position 7214714-7217389(+)
7216661-7213830(+)
7217324-7213879(+)
7213951-7217341(-)
Potential amino acid sequence MLTCEEESELLSSLKFGKEDGWLSAFYSCLIRKHEKEYIVEAKFKEFERESCSISSLSSGLTLK
NNIDVLACKAEYYHQSGEYQKCFELTSALLERDPFHLKCTLVHLAAAMELGHSNDLYILACNLV
KDYPQKALSWFAVGCYYYCIKKYDQARRYFGKATGLDGTFPPAWIGTGIAYAAQEEGDQAMAAF
RTAARLFPGCHLPTLYMGMQYLRMHNFKLAEQEELKEWHQCLIILGDAKIDEHGNVVDQDDGSD
IYFDKDAEDHEINIKAAICFLRGKAYEALDNCDLARQWYKAAVKADPLCYEALECLVDNYMLTC
EEESELLSSLKFGKEDGWLSAFYSCLIRKHEKEYIVEAKFKEFERESCSISSLSSGLTLKNNID
VLACKAEYYHQSGEYQKCFELTSALLERDPFHLKCTLVHLAAAMELGHSNDLYILACNLVKDYP
QKALSWFAVGCYYYCIKKYDQARRYFGKATGLDGTFPPAWIGTGIAYAAQEEGDQAMAAFRTAA
RLFPGCHLPTLYMGMQYLRMHNFKLAEQEELKEWHQCLIILGDAKIDEHGNVVDQDDGSDIYFD
KDAEDHEINIKAAICFLRGKAYEALDNCDLARQWYKAAVKADPLCYEALECLVDNYMLTCEEES
ELLSSLKFGKEDGWLSAFYSCLIRKHEKEYIVEAKFKEFERESCSISSLSSGLTLKNNIDVLAC
KAEYYHQSGEYQKCFELTSALLERDPFHLKCTLVHLAAAMELGHSNDLYILACNLVKDYPQKAL
SWFAVGCYYYCIKKYDQARRYFGKATGLDGTFPPAWIGTGIAYAAQEEGDQAMAAFRTAARLFP
GCHLPTLYMGMQYLRMHNFKLAEQEELKEWHQCLIILGDAKIDEHGNVVDQDDGSDIYFDKDAE
DHEINIKAAICFLRGKAYEALDNCDLARQWYKAAVKADPLCYEALECLVDNYMLTCEEESELLS
SLKFGKEDGWLSAFYSCLIRKHEKEYIVEAKFKEFERESCSISSLSSGLTLKNNIDVLACKAEY
YHQSGEYQKCFELTSALLERDPFHLKCTLVHLAAAMELGHSNDLYILACNLVKDYPQKALSWFA
VGCYYYCIKKYDQARRYFGKATGLDGTFPPAWIGTGIAYAAQEEGDQAMAAFRTAARLFPGCHL
PTLYMGMQYLRMHNFKLAEQ(+)
MGHFLLLGLVLVLLMLHRRRVIKQWLHFGQQLGYFLDVICQLYTWACNICECTISNLQSRRS*(
+)
MSSANFIHGHAIFANAQFQTCRAGGVERMASVFDHTWRCKNR*(+)
MVFSILIKVNVTAIILINNVSMLIYFCISKYDQTLMPFFQLLLLCKFEIVHSQILHAHV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017