Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d018142_circ_g.2 |
ID in PlantcircBase | zma_circ_008815 |
Alias | Zm05circ00130 |
Organism | Zea mays |
Position | chr5: 215344183-215345669 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d018142 |
Parent gene annotation |
MADS-box protein SVP |
Parent gene strand | + |
Alternative splicing | Zm00001d018142_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d018142_T002:4 Zm00001d018142_T001:4 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.047572742 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
215344185-215344188(+) 215345475-215344188(+) |
Potential amino acid sequence |
MNEIIDKYNTHSKNLGKTEQPSLDLNLEHSKYANLNEQLAEASLRLRQMRGEELEGLNVEELQQ LEKNLESGLHRVLQTKDQQFLEQINDLERKYE*(+) MLKNSSNWRRTWNLVCIGCFKQRINNSWNRSMTSNVSMNEIIDKYNTHSKNLGKTEQPSLDLNL EHSKYANLNEQLAEASLRLRQMRGEELEGLNVEELQQLEKNLESGLHRVLQTKDQQFLEQINDL ERKYE*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Han et al., 2020 |