Detail information of Os06g0193000_circ_g.4


General Information
CircRNA Name Os06g0193000_circ_g.4
ID in PlantcircBase osa_circ_030009
Alias NA
Organism Oryza sativa
Position chr6: 4691813-4692204  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os06g0193000
Parent gene annotation Similar to Ubiquitin conjugating enzyme 2. (Os06t0193000-01);Sim
ilar to ubiquitin-conjugating enzyme E2 J2. (Os06t0193000-02)
Parent gene strand -
Alternative splicing Os06g0193000_circ_g.3
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CA-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATAGGCATGAATAACATCTTGTGTACATGGGTTAGCAATTAAAACAGGATGAGAATCTTTCT
TGCTAATTCTGAGCTGATGCAAAACTAAGAGCTTACtgagaaacaagacctcttcaaccatatg
aggaacaagaaataacaaatttgcacttctttttcacagtttatacttgtgaagacaaaatgga
aatggttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGAGAAACAAGACCTCTTCAACCATATGAGGAACAAGAAATAACAAATTTGCACTTCTTTTTCA
CAGTTTATACTTGTGAAGACAAAATGGAAATGGTTTTGTTCCAACTACAGCTGGACAGTTGTTT
CATTGCTGTTAAGCACCACTTATATTACTCACATGACAAATAGATGAGATTATCACTAAAATAG
GGAATCGGTCTGAGTTAAGCTGGTTTACAGAACTGCATTCTCGCAAGCGAAAAAGCAACAGTGT
TGCTTGGGGGTGGGGGATCAAGATTACCAATATTATTAATAGGCATGAATAACATCTTGTGTAC
ATGGGTTAGCAATTAAAACAGGATGAGAATCTTTCTTGCTAATTCTGAGCTGATGCAAAACTAA
GAGCTTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.332456314
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017