Detail information of BGIOSGA029131_circ_igg.1


General Information
CircRNA Name BGIOSGA029131_circ_igg.1
ID in PlantcircBase osi_circ_018138
Alias Chr08:28879816_28884043(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr8: 29445118-29449346  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCAATCAAGTAGAGTTCCATGTATATGCATGCTCAGCAGCAGGTCAAGGAATACGGTGGAAC
GACTAAACATCACCACAAAACAGGCAGCAATACCTTcttgcatgccatatcattcaactcttca
accagcaaacctgagctcttgctgtcatggcagggcttagcaccggagcaggtgctccagttgt
gaagttat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGCATGCCATATCATTCAACTCTTCAACCAGCAAACCTGAGCTCTTGCTGTCATGGCAGGGC
TTAGCACCGGAGCAGGTGCTCCAGTTGTGAAGTTATACCATGAGAAATCCATGATCATGCCTGA
TGTGTCCAGAGTGCTTGCATGCCTGTATGAGAAAAACATCGAGTTTGAGACTGTCAAGGATTCT
TACAAGGACATCCTCAGGCTCCAGGTACTTTGCTGCCACATTTATGTGTTACTTTCCGTTTTCG
GCAACACCCAGAATGTACAACAATAGAAGCAGTTTCTTGGGTTTATATATTTATATCTCATTTC
GAGTTTTTATTTTGTTCTGTGACTGTAGGCATCGAGGAGTGTTCCAGTTCCATTCTACGATGGA
CCCACATTTCTACAAGGTAACAATGCTTGTTGCACAATCTAGCCTGTCTTAATTTGGCAAGGTG
TGTGATGTATCCATGGTTTAGGTAAGCTTGCATGGCTAAAGGAACATAGCTTTTTTTTTGGTTA
ATCACAAATCCTAGAATGAGATGCTTGTTACCTGTATCAGCATGCGTGCCTTGTAGATGAGACA
TTTTTGAACCGAATCAAATAAGTTGAATTCAATTTATGTCTTGTGCATCCACCCTGCAAATGAT
TGGTGCAGGAATTTTAAACCTGTAGATGAAATGAAATTGACATGTCAATCAATAGCCATGTGAT
CTCAGAAGATTGACATTATTCATTATTTCAGGATGAAAATAATTAATATAACAGTAGACTTAAA
ATGAAACAAAGAAAGAATGATTCTCAGCATTCTGGTTTTCAGAAACTTAGGTGCTACACCATAT
CATGTCCCCTTTCATTTCAAAATTCCATTTAAAGTGGAAATAGTTGGCAGACCCTGTTCATCAA
AATGTAGTGCCATTGTGCAACCACTGTGTACCATGTCGTGCATTCATCATTAGCGGCAATTTCT
TTCATGATTACGGTTTGAACATGAAATGAAATGCTGAATGTATGTCTAAAAACTGGTTCGAAAA
TAAAAACCTCATGAAGCACTCAAGTGGAAAGAGAGGTACATTTCACATTCTAGCAAGTATATCA
TGGTTGTACTAGCAGGATTCATGGTGCCAAAATAAACAAATGCTTCTTAGCATGTATTAATCAT
GTGAATTGGCAACTGAAATCACACTATCTAGAACTATCTCAATTTTCTCAACTGAGGTTATGTA
GGACATACACTGTCCACAGAAACCAGAAATATAGTAATGGTGCATCTTCAGTCTTCAATCAGAA
TATGGTACTGACCCTTCTTCTTACCTGCAGAATCAAGAGCAATTTGCCGCTACATAGCAGAAAC
CTATGAACAGCGTGGGTATCCTTTCCTGCTGGGAAAGGATGTTCTGGAGAGGGCTTCCATTGAA
CAATGGCTCCGTCATGAGGAGCATGCGTTTGATCCTCCAAGCCGGGCATTGTTTTGCCACCTGG
CCTTTCCTGTGCAGGATGACGACGATGATGATATCAACACAGAGAAAAGAAAACTGGAAGAAGT
CCTTGAAGTCTATGAACAAAGGCTTGGTGAGAGTGAGTTCCTTGCTGGGAACAAGTTCACCCTT
GCTGACCTTGTTCACTTGCCAAACACCCACCACCTTGTGACATCTGAATTTGCCTACCTGTATG
ACTCAAGGAAGAATGTGCAGAGGTGGTGGGATACAATCTCCAACCGCCAATCTTGGAAGCAGGT
GCTGAAGGATATGAACAGAGTGGAGGAGGAATACCAAATGGAACTAGAGCAGCAGGAGGAGCAG
TGGCAGACAGAGCTTCCCCAAACATCTGTTGGCCACACCATTCACTTAGACCCTCGGCAGACGA
CTAGCACTGAGTCACGGACAGTACTAGTCCCACCTCCCAGTGCTGGTATGATCTCAACCTCATT
TTCATCACAAAGAGAGCAACCTCTGCCCTCTGAAACAACCCGCCAAGATAAACCCTCACCTAGA
AAAGAAAGCAACTTCTTTACTACCACAGAGAAAACTCCATCAACCCCAAGGTCTAGAGCTCCTA
CAACTCAGAAACAGCCTAGCAGTACCTTCTTCACCCCATCTACCACCCCCAAAATTCCTCAGAG
AACAGATACTGATATATCCAGCTCCAAAGATGCCCCATACCAAACCAAACCTAGTGAAACAACA
TCGAAAGAAGCTCATGATAAATCCCATCTCTCTGGCTTTTTTAAGGCTAGGAGCCATACCGATG
AAACAGCAACTCCTACAAAACATAGTCCACAAGAAGACTCGAAAACTTCTACCAAGATACCCAA
AACACGTGATATCAGTGAGGCACTCGGTCCTAATAGTCCAATATCAACCAAAGCTCCCCATGAA
ATTGATGAACGTGCCAGTGTTGATCCCCGCTTTGACAAGCCAGCTCCATATACCAAGCCTACCA
CAAACATACCACAAACTTCTTCTGGAAGGCCTTCTGCACAGAGAGATCTAGGCACTTCTCCTGG
CACTGAGGCAGACAAAACATCTTCTGATCTGGGAGGTGGTGTTCAGTCTCCTTATGCACAGGGA
CGTGCTGAGCAAGTGAAGAAAACCTCATCTGATCAGAGAGGTTCTGAAACTGCACAACCAGCTC
AACCCCGTGGCACCCAGCAATTCACCAAGGATGCTAGACAGGCTGATCAAAACAGGATAGCTGC
ATCACCACGTCAACAACCATCAGGTGAGCAAAATGTCCATAAGCAATTTATAGCACCACCAATT
CTGAAAAATACCTGACTTGTCAACAATGCAACCAGAGTCTCAAGAAGACACTCATAACATCATG
AGTGAAGATGAAAGATTCTCTACCAAGAGGCTCCGGAAGATGATGGAGGAAAGTGAAAAGGAAG
CACAAGAAGTTAAATCACAGCCTACAGATTTTCGACCTTCAAAGGAGGAAACACCATCTATCTA
TAAGAATCCCTCAGATGTGCAAGACAGAACCATTTTGGATGATAGAAAAAGTGGTAGATCTCCG
TCAGCTGGCACACGAGCTCCTGACTATCCAACAAGTGCTGCTGAAAGAAGAGTTGCTTCACAAC
CAAAAGAAGGAATGCCATATGATGATCGTGGTGCCACTAAACCACAAAAATCACCATCCATCAA
TGAGCAAGAAAAAATTCCAGTAGTGCCAAGCCAAGCGCCACCAGCCAGTTCAGGGAAAGCTTCC
GAATCATTAAAGGAAGTTTCCCCTGATGATGGCTTGGCTCAAGTATCCACCATCAATCAATGGA
GACAAACCTCTGCACCTCCTCCAACCAAACTAGCAGCTCCTGATGCTCCTAGAAATGTTGAGTT
GGCCAAAACAGAAGGTGTTGACAAGAGGACACAGCCAAGCACAACAAAGGAAACCCCAAGGAAT
GATAGAAATGTTTTAGCAACAGGGCAAGGAGCTGATCGTGGAGTTGGTAATGAACAATATGACA
AGAATTCCATCGATGAAAGAGCACCACAAATGACACCAAGGCAAGCAGCACCTTCTGTCACTCA
GCGTGCTTCAGCATCAATCCAAGAAAGAATTAGTGGTGCCCGTGGCGCTAGTGATGATATGTTT
GGAAAAACATCAAGTGCTGATCAAAGCAACACTCCAGCCATACCAAAGCAAACAACAGTTCAAG
GAGCAACCCCTGATGTTCGTGGTACTAGTTATGCTGACAGAGAGATGAAACTTCCTGCTGATGA
AAAGGCAACAGCAAACAAGCAGAAGCCAGTTTCAAGTTCCCAACAGACAATTGAACCAATTAGA
GGAGGAACTCCTACCTCATATGGCAGTACTGATGATGACTTGGCCAAGACATCAAGAGCTAATG
AAAGACAAACGCCACCTTCAAAGGCGCAAGCACCAGCATCCAACAGACAGAGTGCTTCTACAGC
TCTCCAAGGAGGCACACCTGATGCTCGTGGGGAAAATACAGCAGTCAAACCATCAGTCACTTCT
CCAACAGGTATGCCTACTTCATCAAGAAGACAAGAACCAACTCCATCAGTCACTTCTCCAACAG
GCGTGCCTACTTCACCAAGAAGACAAGAACCAACTCCTGACACTCAACGTCGTCGCGCAGCAGG
TAAAGTAACCCCCACTAAAAGAAAATTTGCTCAATTCAATCAAGTAGAGTTCCATGTATATGCA
TGCTCAGCAGCAGGTCAAGGAATACGGTGGAACGACTAAACATCACCACAAAACAGGCAGCAAT
ACCTT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021