Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Csa2G009280_circ_g.4 |
| ID in PlantcircBase | csa_circ_000794 |
| Alias | Chr2:1541575_1545801 |
| Organism | Cucumis sativus |
| Position | chrChr2: 1541575-1545801 JBrowse» |
| Reference genome | Cucumis sativus v1.5 |
| Type | e-circRNA |
| Identification method | CIRI2 |
| Parent gene | Csa2G009280 |
| Parent gene annotation | NA |
| Parent gene strand | + |
| Alternative splicing | Csa2G009280_circ_g.6 |
| Support reads | NA |
| Tissues | leaf,root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Csa2G009280.1:4 Csa2G009280.2:4 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.091038422 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
1544903-1541616(+) 1545639-1541616(+) |
| Potential amino acid sequence |
MGSNAPKCLVTQILEIQPAGWFKWQRNHPSKFEKSVPYALLCQVAGLKEYVLANPALNYENLPT VVRSKISDGSTTNSDYDDGEVQDEFYDAIAADSSSSEEESDNDKELNNKIPMQKRLYLLPTMV* MKTCPLLSVQKSQMALLRTVTMMMEKCRMNFMMQLLPIHHLRKRKVIMIKNLTIRSQCKRDFIF SRQWFRGQDGTYTILQVPCSHKKKPPRSGYRRSRINPSTWEIRCLNTAMGSNAPKCLVTQILEI QPAGWFKWQRNHPSKFEKSVPYALLCQVAGLKEYVLANPALNYENLPTVVRSKISDGSTTNSDY DDGEVQDEFYDAIAADSSSSEEESDNDKELNNKIPMQKRLYLLPTMV* |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Zhu et al., 2019 |