Detail information of Os01g0155400_circ_g.6


General Information
CircRNA Name Os01g0155400_circ_g.6
ID in PlantcircBase osa_circ_000390
Alias NA
Organism Oryza sativa
Position chr1: 2973830-2977009  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os01g0155400
Parent gene annotation Conserved hypothetical protein. (Os01t0155400-01)
Parent gene strand -
Alternative splicing Os01g0155400_circ_igg.1 Os01g0155400_circ_g.1 Os01g0155400_circ_g.2 Os01g0155400_circ_g.3 Os01g0155400_circ_g.4 Os01g0155400_circ_igg.5 Os01g0155400_circ_igg.7
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0155400-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTTTCCGTAGTTTTTGCATGGTCTTCTTGAGTTTGTTGAACTCTTGATGTCTCCTTCTCATTT
AGTTTCTTCCACAACTCTACAGCTTCAGCATCTATTttggttctcttttccttctgttcattat
atgatgactgaagctgccacgtatcctcaaggaaattgatccaagtcttgactacgccagcctc
cacattac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 681
Transcript exons: 2973830-2973960,2974093-2974200,2974577-2974642,2974990-
2975056,2975741-2975816,2976399-2976510,2976889-2977009
TTGGTTCTCTTTTCCTTCTGTTCATTATATGATGACTGAAGCTGCCACGTATCCTCAAGGAAAT
TGATCCAAGTCTTGACTACGCCAGCCTCCACATTACATGAGGTAATAGATTTTGAAAGTTCATT
ATCCTTCGCTTTTAAACTAAATATCATTTGATTGTTTGCTTCATCAAATTGATCCCTCTCTTCC
CTTGTTTGCTTGAGACGTCCAATGGCAGCATTCAGTGAAATGTTGACCTTCTTCAACCGAGCCT
CAAGTTCGTCACGTTGCTTCTCCAATTCAGAAATCTCAGCCGTCAACTCCTTTTCAACTGCACT
CACTTCATTCTCCTTTTTAGCACGGAAGTTAAGAGCCTCTTCTTTCTGGCGCCTGTGATCCAAA
ATACGCTTCTCAGCCTTGGAAGATGAATTAGAGAGGGAAGTTGCTAAGACCTTTAATTTGTCAA
CCTTTTGGGAACGAATCTCAAGGGAGTCTCCGGCAGTAGATGTTTTTTTCTTCAGTAAAAGCTC
TTCCATTCTAGAGCAGAATCGGACTTCAGAGAGTGCTTCTTTGAATGACTCAACAGTTGTAGCA
GAAGTCCTTTCCGTAGTTTTTGCATGGTCTTCTTGAGTTTGTTGAACTCTTGATGTCTCCTTCT
CATTTAGTTTCTTCCACAACTCTACAGCTTCAGCATCTATT

Genomic sequence TTGGTTCTCTTTTCCTTCTGTTCATTATATGATGACTGAAGCTGCCACGTATCCTCAAGGAAAT
TGATCCAAGTCTTGACTACGCCAGCCTCCACATTACATGAGGTAATAGATTTTGAAAGTTCATT
ATCCTGATTGATGCCAGGGAAGAGAACAAAATATTAAGTTGATCAATATTTTGATAACAAACAG
CACTAATCAATTGCAAGAAATATAACTGAAAAAAAAAATTGAAACCAGATCAACAAATAAAGTA
TCAGCACCTTCGCTTTTAAACTAAATATCATTTGATTGTTTGCTTCATCAAATTGATCCCTCTC
TTCCCTTGTTTGCTTGAGACGTCCAATGGCAGCATTCAGTGAAATGTTGACCTGTTGGTGGAGA
GATATAGAAAGAACACAAACCTAATGTCAACCTTAAGCAGAACAATAATAATTCTTATAGAAAC
AATTCAGCAGAAATGTAACTCCACCAGCCCACTATATATTGATAAAAGTAACGCGATTGAATGG
TGCTGGAGTATATTTGTAAAGCAAATTTCCAATTTTGTCATTTTTATTCATATTTTTAAAGGAA
TATAACTCTTTAAACTTATTTACAAGATGGCATATCAGTTGATTAAATATCTTACATTTTTTAG
ATTTAAAATTGATGGCACATAACAACTGCATATCCACATCAAACCTAGCACTGGAAGCCAACAA
CCAAACAAATCCTTTAGAAGGTTCTAAATGAGGGAAAAGGCACCTTCTTCAACCGAGCCTCAAG
TTCGTCACGTTGCTTCTCCAATTCAGAAATCTCAGCCGTCAACTCCTATACCAGAGACACGTTC
ACAAAAAGGGATGAGCATCAACAGATAATACAGTGAAGAAATACCCGCATATGCATTCCTTTTA
CAATGTAAACATATGCAATATATGTATTACATGTGCAGGCACTTATGTTCTGCAAATACAAATC
AAATGTGCAGAAACCAAGGTCCAAAGGCCTTGTGCTCATGCAAGATGTCTTCCTTTAAGTGAGC
ACATGTAATGAAATAAGTTAAGAGAAAGCTCCAAAACTGCTTATGAAAGTCATAATTTGAGTTC
CATGATCTGAAATGTATGAGTTCTTAACTTCTTAAAGTACAAGGAGTCCAAAACATGAGATATG
GTTCTTACCTTTTCAACTGCACTCACTTCATTCTCCTTTTTAGCACGGAAGTTAAGAGCCTCTT
CTTTCTGGCGCCTATTATCCGTATGGCACAATACAACTTGAAAGGTCACCACCAGTTCACCACA
AAGTTTCTCATACCAAGAATTCATTATTCAAATATATAACAAACAATTCTAGCATACAACCACA
CTAGCGACCAACATTATATGCTTTTGAGTTGTGGCCAGCAATGAATACAGCTCAGAGACAAGAA
GATGTTGATAAATGCCAGAATAACGACAACCAGCCAGATGTAAATCTCTAAAGAAAATCACATA
AATTCAAAACATGATTATGTGAATCGAGCACTGCTTGATTGTGCCATGCAAATCTGAAGTGTGG
AACTAAAGAACATCAACTGCTGCGGTAAAAATTGACAAGATCAGGTGTGCATAGGATTATGGAA
CATAGTGGGCATCATAATCATATTTTAGAACCTTCTCTAAGTGTTCATACAGCTACTCTGTATT
AGTTTTCCAATTGAAAAACTCTACAAAAAAAAATGAACCTTCTCCCTTTTATGTGAATTCCCCA
GAGGCAAACTAACTTGTGAAGGCCTATCTGTTCTATCTCACAAGCCCCAAGAAAACAAAGGCAA
AAAGGTATTACGATGTAAACAAACCACCACTAAAGTAACATAAATTTCTAGAACATGTTATGAA
GATTTAACAAATGATATCAAAAGATTCATAAAGAAATAAGTTCAGATAGCTATACCTGTGATCC
AAAATACGCTTCTCAGCCTTGGAAGATGAATTAGAGAGGGAAGTTGCTAAGACCTTTAATTTGT
CAACCTGCAAAGCTAATGGGATTAATGTTGTATCCTGTGCATTTCCCCCCAAATGTTAACAACT
TAACATGTACATAGCTCAACCAAAAGATAACACAAAAACGGATACAATCACCAGCAGTGGCATT
GGTGACCAGCCACCAGCAGTCACAGGTCCACAGAGCATATGTTAATGCAAAACTTTAGCAGAAG
AAATAGATTTTTACGGTCCTCACGTCCAACAAACATGGATCACAGTGCAAAGGTTGTTCAGTAG
AAACTAGAAAGTAAATCTAAGTACAGACACAAGAAAGAATAGAGTCCCATAGCCCATCAGGTCA
TTTCTTCAATGTATAAAGTCCAAAAATGAAGACCCAGGAACAAAAATAACAGAGCAGTGAAGCA
TGCATGCAAATTTGCAGAGCTGAAGATTAAATATATTCTTGTTGAAGTTTTACTGAGTGCATGC
ATAAAAATCACTTAAGAAACATGCGATGGCATTCCATGGGATGGGACTAAGATACTTATTCATT
ATATGAGGCTGAATATTAGTTAAATAAGTTGACCAGCTAAAATTTGAGATACATAAATTCACAT
GAAAACATGCCTTTTGGGAACGAATCTCAAGGGAGTCTCCGGCAGTAGATGTTTTTTTCTTCAG
TAAAAGCTCTTCCATTCTAGAGCAGAATCGGACTTCAGAGAGTGCTTCTTTGAATGACTGGTCA
AAGCAGAGAATTCAGTTAGCTTCTTAAAACCAATGTGAAACAGAAAACATTTCAAATACAAGAC
AGAACAGGTCAAACCAAATTGGGCCACGTGGTACTGAACTACCGAACACAGATGGACCGCATAG
ATTTAGCAGGATCAGTATTAGTAATAATTGGACTATCATGGTCAGCGTTTGCTCTAATAAGACT
AGTATCAACAAAAGTGCAAACAGAATAATTGAAGGCCCTGAACAATCTTATTTGTGCATGAGAC
TGTCTGTAAGTCAACAACTGAACTAAGTCCAGAAAGCCTATGTGAACATCTCATTGGTAAAATG
AGCAAAGTAAATCATTTACTCAAATTGAATATAATTCAATAGAGGCAACACCTCAACAGTTGTA
GCAGAAGTCCTTTCCGTAGTTTTTGCATGGTCTTCTTGAGTTTGTTGAACTCTTGATGTCTCCT
TCTCATTTAGTTTCTTCCACAACTCTACAGCTTCAGCATCTATT
Conservation Information
Conserved circRNAs NA
PMCS 0.207227115
Functional Information
Coding potential Y
Potential coding position 2976958-2973893(+)
2976470-2973832(-)
Potential amino acid sequence MSPSHLVSSTTLQLQHLFWFSFPSVHYMMTEAATYPQGN*(+)
MEELLLKKKTSTAGDSLEIRSQKVDKLKVLATSLSNSSSKAEKRILDHRRQKEEALNFRAKKEN
EVSAVEKELTAEISELEKQRDELEARLKKVNISLNAAIGRLKQTREERDQFDEANNQMIFSLKA
KDNELSKSITSCNVEAGVVKTWINFLEDTWQLQSSYNEQKEKRTKIDAEAVELWKKLNEKETSR
VQQTQEDHAKTTERTSATTVESFKEALSEVRFCSRMEELLLKKKTSTAGDSLEIRSQKVDKLKV
LATSLSNSSSKAEKRILDHRRQKEEALNFRAKKENEVSAVEKELTAEISELEKQRDELEARLKK
VNISLNAAIGRLKQTREERDQFDEANNQMIFSLKAKDNELSKSITSCNVEAGVVKTWINFLEDT
WQLQSSYNEQKEKRTKIDAEAVELWKKLNEKETSRVQQTQEDHAKTTERTSATTVESFKEALSE
VRFCSRMEELLLKKKTSTAGDSLEIRSQKVDKLKVLATSLSNSSSKAEKRILDHRRQKEEALNF
RAKKENEVSAVEKELTAEISELEKQRDELEARLKKVNISLNAAIGRLKQTREERDQFDEANNQM
IFSLKAKDNELSKSITSCNVEAGVVKTWINFLEDTWQLQSSYNEQKEKRTKIDAEAVELWKKLN
EKETSRVQQTQEDHAKTTERTSATTVESFKEALSEVRFCSRMEELLLKKKTSTAGDSLEIRSQK
VDKLKVLATSLSNSSSKAEKRILDHRRQKEEALNFRAKKENEVSAVEKELTAEISELEKQRDEL
EARLKKVNISLNAAIGRLKQTREERDQFDEANNQMIFSLKAKDNELSKSITSCNVEAGVVKTWI
NFLEDTWQLQSSYNEQKEKRT(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017