Plant Circular RNA Database

Detail information of orai.007G118400_circ_g.1

			
						 General Information
					
						CircRNA Name
						orai.007G118400_circ_g.1
					
						ID in PlantcircBase
						gra_circ_000719
					
						Alias
						Chr07:9317053|9320915
					
						Organism
						
							Gossypium raimondii						
					
						Position
						
							chrChr07: 9317053-9320915  JBrowse»						
					
						Reference genome
						
							Graimondii_221						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							Gorai.007G118400						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						2
					
						Tissues
						leaf
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Gorai.007G118400.1:13
Gorai.007G118400.2:12

General Information
CircRNA Name	orai.007G118400_circ_g.1
ID in PlantcircBase	gra_circ_000719
Alias	Chr07:9317053\|9320915
Organism	Gossypium raimondii
Position	chrChr07: 9317053-9320915 JBrowse»
Reference genome	Graimondii_221
Type	u-circRNA
Identification method	CIRI
Parent gene	Gorai.007G118400
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	NA
Support reads	2
Tissues	leaf
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Gorai.007G118400.1:13 Gorai.007G118400.2:12

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AATCCCAACTATACTCCACAAACTCAAAACCCATATCAGAACTCGCTTCATTATTTCTCTCTTT
TGTCTTTTTCACTCCTCTTCTAGATTACAGCTAACTcttatctggctaggatttggactttaat
gttataattgttagtcactgtccaaactgaaaccccatgatgcatttggaacacatattaaggt
gatcaaga

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTATCTGGCTAGGATTTGGACTTTAATGTTATAATTGTTAGTCACTGTCCAAACTGAAACCCC
ATGATGCATTTGGAACACATATTAAGGTGATCAAGAAGGCATTAAGCAGATTTAGGGGAGTAAA
TGTCAATCTTGTCGACTCTGAGATTGTTATGGTTGAAGTAACATCACTGCATAGGAAGATATTA
ATTTCAGTCTCACAGTCGACGTGGAGTGATGAAATCCAGAAAGGGTGCATTAGGCATACTTAAA
ATGCCAAGAGACTATAACAGATGACATATGCACTTGACCACAAGGGGGTGTAAGAGTTTGAACT
ACTAGGATTCCTAGGGAAACAATTTCATCCTAGATTTATTTGAAAGGTTGTACAATATTATATT
TTTCTGCTCAGTTTGAGTGCGAAGATATAAAGAGTCTTTGGAGACATTATATTGCTTAAAGGAT
AGATTTTGAAATAAAATAAATAAATAGGAGAGTATATTGCTAATCATAGTGATTTGCATACCCT
AGAAATCTCATAGTTTATCAGTTTATTGTCCAAATGAATGAATGTTACAGTTTCCACAAACGGC
AATTGGGAAAAGAATGAAGTGAAAGCCAACAGGCCTTTACATGCAATCAATGAGAAGTTCTCAC
TCACTTGAAGATAAGATTGTGACAAGTATTGTCACAGGGGTACGGACAGTCAATAGCTTTAGTA
GCTGTTCGATCAAAGAACCAGTCTCCAACAGATGCTGCAATTGCCTGCGTGTTGATAACAAAAT
CAAATTTGCAAATAAAGTCTGACCCTTACATCCAGGCGGAGAATATATTTGCAACATTACGTTC
AAGCATTTAAGAGAGTCCAAAATTAAGTTTTATGAAAAGATGAGATATACCTTGTTTCCAATAC
GAGGGGAATCATTTGCATACCATGTGTCCTGTCTCTCTGACTGGCAGTGAGCAAAACAAGAATT
TATGAATAAACCATTTTGGTTGGACATTGAGAAACCATTTATGCCACTGAGCATTTGATTCCTG
AAGTCTGCTTTCAATGGGAGAATGAAGAATAGAGCGGTTATGGGCAATTCATCTATATTTGACT
TGTCACTAACACATTTGAGTTAAAGCATAACAGAAACAAACTTGAAAATCACCTTGCAGAAACA
GCATTTGTGATGAGTTACAATGAGAATGATCCATTTTGCAGTCACGCCAGAAGCTGTGAGGATC
AGCAGATGATGGAATTAAACTCTCTTGGACCTGAAAACAGAAATAAGAGAAAATTGTTGTCATA
CATAAGTCAATACAGGACACTAACCGGACAATCCCAAAGTTTTGTTTTTGACAACTGTGTTCAA
CAGGTCTTAAAGTTAGCATATGACTTCTTGCCTTCAATATGTTTCTGGATGGACACATGGATTC
TCATTTGTGGAAAAACAAAAGAAGAGGAGAGAAAAGAAGAAACAGAAAGCAGCAAAAAGAGGAA
AATTACCTGCCATGCATCATAGGCTGCATTGAGAAGGAACAGAGGGGTCTGGATATTTGCAATC
AAGTTTTGAGGGAAGAAGCACTGCAAATGAAAGCTAGGATTATGGGCTTTCTAATGATGAGTTG
CATCTACTCAGTTAATCTGATCTAGTACATGAGCCCCATTAAAGAAAGCAGAGACGTTTTACCG
AAGTTGGATCCATTTGGCTGGTACAAGTATTTGGAAGATTCTTTTGCACACCCTAAAATTTCAT
GTAAAGTTTTATTTTAGCCAGCAGAAAGCAATGAGAAAAAGTTTCATGACCAAGCGTTGATTAC
TCGTAAGTCATAACAGCACTAGCTATTTTTTTCTCGAGGACCAAATATATATCTCGAAAAAGAA
CTAGAACCACAAAATATCAGTAATAGCTCAGGAACCTCAGAATTATACTGAAGCTTACTTGACC
TTCTAAGGTTTAGACATGAAACCTTATGTTCTACTTATTAATTGAGTGTCAACCAAATACAGAA
ATCCAAGAGGTGAAAAAGTAGTACCTGTAAGGTAACCACACCCCTATACATATCCCTTAAGGTA
TGTCCACCAGCCACATTGGTTCTGCATAAATAATGAAAACCATGGATTAAGACGATTTTAATAA
ATAGGCAAAAGGCTACTATATCCAAAAAGGAGCAGAATGAAGTATAGTTCATTACGCATCAAGG
AACACGCCTGCATCACTTAGACATTTTACTTTTGTAGTGCTTGGAAACATATCCTTAAATTCAT
CACAATGAAGAATGGAAGCTAGACCCCCAGCTGAGCATCCAGAAAGAAGAGCCTGAAACACAAT
CAAATCTAACATATATTAGATATCCAAACCAGATTGGGAACTGAATAAAAAGCATGCTACATGC
GCAACCTGCTCAGCATTCTGCATTCCCTTGGCCATTAATTCCTCCATAGCAGCAGACCAGATCC
TTTGTCCTCTAAAATAAAGTTGGTTAGCCTGGATGCAAAATCACAGAATACCATGAATGCTTCA
CCAAATTAAGATAGTAACAACTAACAAGTTCTATAGAATATACCCTACAGAAGGAAAAACGATC
TGTTCTTAAAATGAGAACTTAAAAAGAACTTAACATATTATTCTTACAACCACCCCCCAGCCCA
AGAAACATTCACCAGTTTGTCTATTTAGAGTTTGCTTACAATAACCACATAAAACTTTCCTAAC
ACTCAGAAATCGTTGAAGAGACTAAAGGAATAAGGGTGAAAACAATAGTAATTTTGGGGCTAAG
AATCTGAAATAAGCATTGAGTAAATCAAATTGATCGCTAATTTTCACTGACTAGGGTATTTGTG
TCACTGGCGACTTAACGATAGTTGAGGGAAATGCTGCAAGAGGTTAGTACATAATACTACTCTT
GCTTACCTCATTCTGGCCCTCCCCAGCAAAAGATGCCCCATCACAGTAACGTAGCTTCACTCTG
TTCCAGTTATAGAAATCTGCACAACACGAGAGGCCCCATTCAAAATTTTTATGAAGAAATGCTG
CATAAATACTTGTCCAAAAAGTAAAAATGGGACCATCAATTCTACAAACCAGGGTTTTCTTCAG
CTTTATTGCTCAATATTCCAGTAAAATTTAGTCGCTTCTCCATAAATTTTGATGAACCACGTCG
AGTAGTTTTGCGGAAGACACAACTTCGAACGGTATTACACCATCCGCCTCCCTAAAACAAACAT
AAATTCCAGTTAAGTCACTAAAATTAGCTACAAAGGAAATCAAACTACTAAGAGTAGTAAATGA
AACCACTAAAAGGTCCTTTCCTGACATAGGAAAGGTCAAATGACTTTAGAATCTAAGACCAAAA
AAAGGATGAAAATCAATCTTTATTAGATAATGTGGTGTTGAAGTATGTTGGCCAAACCTCCAAT
TGGATGAGCCAGCTGTTTGAACCAGAGCCGAACCCACGATCCAGATGATAACCAGGAGGCGTCC
CATCCAGACAAACTGTGAAACCCAAGGCATGAAAAGTAAGAAAATGACCAAAAAAAAAAGGAAA
AAGGAGTCTCATATCTCAACATGAATCAAGAATCAGAATTTCAGGGCAGTCCTGGAATGCAAGA
AGTAAATGATGTGTTGAAGTTTGAGAAGTACCAGCTCCTTTAGAAGCAGCTCCTTGAATGAGAG
TGAGGGGAATCATGAGAGAGTTGGCACCAGGGGATACTGCATCTTTCTCTAAGAAGGAAAGTAA
TCTGTCTTTAGCTTTAAGTTCTTGCAACCCATCTTCAGATCGGCTCCAACCAATCCCAACTATA
CTCCACAAACTCAAAACCCATATCAGAACTCGCTTCATTATTTCTCTCTTTTGTCTTTTTCACT
CCTCTTCTAGATTACAGCTAACT
						
					

			
		

Sequences
Splice junction sequence	AATCCCAACTATACTCCACAAACTCAAAACCCATATCAGAACTCGCTTCATTATTTCTCTCTTT TGTCTTTTTCACTCCTCTTCTAGATTACAGCTAACTcttatctggctaggatttggactttaat gttataattgttagtcactgtccaaactgaaaccccatgatgcatttggaacacatattaaggt gatcaaga
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTATCTGGCTAGGATTTGGACTTTAATGTTATAATTGTTAGTCACTGTCCAAACTGAAACCCC ATGATGCATTTGGAACACATATTAAGGTGATCAAGAAGGCATTAAGCAGATTTAGGGGAGTAAA TGTCAATCTTGTCGACTCTGAGATTGTTATGGTTGAAGTAACATCACTGCATAGGAAGATATTA ATTTCAGTCTCACAGTCGACGTGGAGTGATGAAATCCAGAAAGGGTGCATTAGGCATACTTAAA ATGCCAAGAGACTATAACAGATGACATATGCACTTGACCACAAGGGGGTGTAAGAGTTTGAACT ACTAGGATTCCTAGGGAAACAATTTCATCCTAGATTTATTTGAAAGGTTGTACAATATTATATT TTTCTGCTCAGTTTGAGTGCGAAGATATAAAGAGTCTTTGGAGACATTATATTGCTTAAAGGAT AGATTTTGAAATAAAATAAATAAATAGGAGAGTATATTGCTAATCATAGTGATTTGCATACCCT AGAAATCTCATAGTTTATCAGTTTATTGTCCAAATGAATGAATGTTACAGTTTCCACAAACGGC AATTGGGAAAAGAATGAAGTGAAAGCCAACAGGCCTTTACATGCAATCAATGAGAAGTTCTCAC TCACTTGAAGATAAGATTGTGACAAGTATTGTCACAGGGGTACGGACAGTCAATAGCTTTAGTA GCTGTTCGATCAAAGAACCAGTCTCCAACAGATGCTGCAATTGCCTGCGTGTTGATAACAAAAT CAAATTTGCAAATAAAGTCTGACCCTTACATCCAGGCGGAGAATATATTTGCAACATTACGTTC AAGCATTTAAGAGAGTCCAAAATTAAGTTTTATGAAAAGATGAGATATACCTTGTTTCCAATAC GAGGGGAATCATTTGCATACCATGTGTCCTGTCTCTCTGACTGGCAGTGAGCAAAACAAGAATT TATGAATAAACCATTTTGGTTGGACATTGAGAAACCATTTATGCCACTGAGCATTTGATTCCTG AAGTCTGCTTTCAATGGGAGAATGAAGAATAGAGCGGTTATGGGCAATTCATCTATATTTGACT TGTCACTAACACATTTGAGTTAAAGCATAACAGAAACAAACTTGAAAATCACCTTGCAGAAACA GCATTTGTGATGAGTTACAATGAGAATGATCCATTTTGCAGTCACGCCAGAAGCTGTGAGGATC AGCAGATGATGGAATTAAACTCTCTTGGACCTGAAAACAGAAATAAGAGAAAATTGTTGTCATA CATAAGTCAATACAGGACACTAACCGGACAATCCCAAAGTTTTGTTTTTGACAACTGTGTTCAA CAGGTCTTAAAGTTAGCATATGACTTCTTGCCTTCAATATGTTTCTGGATGGACACATGGATTC TCATTTGTGGAAAAACAAAAGAAGAGGAGAGAAAAGAAGAAACAGAAAGCAGCAAAAAGAGGAA AATTACCTGCCATGCATCATAGGCTGCATTGAGAAGGAACAGAGGGGTCTGGATATTTGCAATC AAGTTTTGAGGGAAGAAGCACTGCAAATGAAAGCTAGGATTATGGGCTTTCTAATGATGAGTTG CATCTACTCAGTTAATCTGATCTAGTACATGAGCCCCATTAAAGAAAGCAGAGACGTTTTACCG AAGTTGGATCCATTTGGCTGGTACAAGTATTTGGAAGATTCTTTTGCACACCCTAAAATTTCAT GTAAAGTTTTATTTTAGCCAGCAGAAAGCAATGAGAAAAAGTTTCATGACCAAGCGTTGATTAC TCGTAAGTCATAACAGCACTAGCTATTTTTTTCTCGAGGACCAAATATATATCTCGAAAAAGAA CTAGAACCACAAAATATCAGTAATAGCTCAGGAACCTCAGAATTATACTGAAGCTTACTTGACC TTCTAAGGTTTAGACATGAAACCTTATGTTCTACTTATTAATTGAGTGTCAACCAAATACAGAA ATCCAAGAGGTGAAAAAGTAGTACCTGTAAGGTAACCACACCCCTATACATATCCCTTAAGGTA TGTCCACCAGCCACATTGGTTCTGCATAAATAATGAAAACCATGGATTAAGACGATTTTAATAA ATAGGCAAAAGGCTACTATATCCAAAAAGGAGCAGAATGAAGTATAGTTCATTACGCATCAAGG AACACGCCTGCATCACTTAGACATTTTACTTTTGTAGTGCTTGGAAACATATCCTTAAATTCAT CACAATGAAGAATGGAAGCTAGACCCCCAGCTGAGCATCCAGAAAGAAGAGCCTGAAACACAAT CAAATCTAACATATATTAGATATCCAAACCAGATTGGGAACTGAATAAAAAGCATGCTACATGC GCAACCTGCTCAGCATTCTGCATTCCCTTGGCCATTAATTCCTCCATAGCAGCAGACCAGATCC TTTGTCCTCTAAAATAAAGTTGGTTAGCCTGGATGCAAAATCACAGAATACCATGAATGCTTCA CCAAATTAAGATAGTAACAACTAACAAGTTCTATAGAATATACCCTACAGAAGGAAAAACGATC TGTTCTTAAAATGAGAACTTAAAAAGAACTTAACATATTATTCTTACAACCACCCCCCAGCCCA AGAAACATTCACCAGTTTGTCTATTTAGAGTTTGCTTACAATAACCACATAAAACTTTCCTAAC ACTCAGAAATCGTTGAAGAGACTAAAGGAATAAGGGTGAAAACAATAGTAATTTTGGGGCTAAG AATCTGAAATAAGCATTGAGTAAATCAAATTGATCGCTAATTTTCACTGACTAGGGTATTTGTG TCACTGGCGACTTAACGATAGTTGAGGGAAATGCTGCAAGAGGTTAGTACATAATACTACTCTT GCTTACCTCATTCTGGCCCTCCCCAGCAAAAGATGCCCCATCACAGTAACGTAGCTTCACTCTG TTCCAGTTATAGAAATCTGCACAACACGAGAGGCCCCATTCAAAATTTTTATGAAGAAATGCTG CATAAATACTTGTCCAAAAAGTAAAAATGGGACCATCAATTCTACAAACCAGGGTTTTCTTCAG CTTTATTGCTCAATATTCCAGTAAAATTTAGTCGCTTCTCCATAAATTTTGATGAACCACGTCG AGTAGTTTTGCGGAAGACACAACTTCGAACGGTATTACACCATCCGCCTCCCTAAAACAAACAT AAATTCCAGTTAAGTCACTAAAATTAGCTACAAAGGAAATCAAACTACTAAGAGTAGTAAATGA AACCACTAAAAGGTCCTTTCCTGACATAGGAAAGGTCAAATGACTTTAGAATCTAAGACCAAAA AAAGGATGAAAATCAATCTTTATTAGATAATGTGGTGTTGAAGTATGTTGGCCAAACCTCCAAT TGGATGAGCCAGCTGTTTGAACCAGAGCCGAACCCACGATCCAGATGATAACCAGGAGGCGTCC CATCCAGACAAACTGTGAAACCCAAGGCATGAAAAGTAAGAAAATGACCAAAAAAAAAAGGAAA AAGGAGTCTCATATCTCAACATGAATCAAGAATCAGAATTTCAGGGCAGTCCTGGAATGCAAGA AGTAAATGATGTGTTGAAGTTTGAGAAGTACCAGCTCCTTTAGAAGCAGCTCCTTGAATGAGAG TGAGGGGAATCATGAGAGAGTTGGCACCAGGGGATACTGCATCTTTCTCTAAGAAGGAAAGTAA TCTGTCTTTAGCTTTAAGTTCTTGCAACCCATCTTCAGATCGGCTCCAACCAATCCCAACTATA CTCCACAAACTCAAAACCCATATCAGAACTCGCTTCATTATTTCTCTCTTTTGTCTTTTTCACT CCTCTTCTAGATTACAGCTAACT

			
						 Conservation Information
					
						Conserved circRNAs
						
							gar_circ_000653 						
					
						PMCS
						0.516996973

Conservation Information
Conserved circRNAs	gar_circ_000653
PMCS	0.516996973

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							gra-miR7502b 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	gra-miR7502b
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhao et al., 2017b

circRNA

Detail information of orai.007G118400_circ_g.1

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