Plant Circular RNA Database

Detail information of Os05g0455500_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os05g0455500_circ_g.2
					
						ID in PlantcircBase
						osa_circ_028122
					
						Alias
						Os_ciR4416
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 22374997-22377905  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os05g0455500						
					
						Parent gene annotation
						
							Similar to Delta-1-pyrroline-5-carboxylate synthetase. (Os05t045
5500-01);Similar to Delta 1-pyrroline-5-carboxylate synthetase (
P5CS). (Os05t0455500-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os05g0455500_circ_g.1 Os05g0455500_circ_g.3 Os05g0455500_circ_g.4 Os05g0455500_circ_g.5 Os05g0455500_circ_g.6 Os05g0455500_circ_g.7 						
					
						Support reads
						5/5
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0455500-02:12
Os05t0455500-01:8

General Information
CircRNA Name	Os05g0455500_circ_g.2
ID in PlantcircBase	osa_circ_028122
Alias	Os_ciR4416
Organism	Oryza sativa
Position	chr5: 22374997-22377905 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os05g0455500
Parent gene annotation	Similar to Delta-1-pyrroline-5-carboxylate synthetase. (Os05t045 5500-01);Similar to Delta 1-pyrroline-5-carboxylate synthetase ( P5CS). (Os05t0455500-02)
Parent gene strand	-
Alternative splicing	Os05g0455500_circ_g.1 Os05g0455500_circ_g.3 Os05g0455500_circ_g.4 Os05g0455500_circ_g.5 Os05g0455500_circ_g.6 Os05g0455500_circ_g.7
Support reads	5/5
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0455500-02:12 Os05t0455500-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTACATCAGCTTCATTCTCAGACCTTATTAAATCCTCATTTGCCTCCAAAGCATCTGCAACATC
TAGCAATATCTTTTTTCGTTCCTCTGATGACAAATTcatcgtgtagttaagagaccttcaacac
ccactggtccacgggcatggatacgccctgtgcttatgccaacctattcaagatattccaataa
gttcagca

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CATCGTGTAGTTAAGAGACCTTCAACACCCACTGGTCCACGGGCATGGATACGCCCTGTGCTTA
TGCCAACCTATTCAAGATATTCCAATAAGTTCAGCAATTAAGAAAGAAAGGTAAATGGCATGTA
AAATTTGAAGTACCTCAGCACCCAATCCAAAACGAGCCCCATCAGAGAATCTCGTACTTGCATT
ATGAAATACAGCAGCACTGTTCAAATTGAGAAGTAGAACAGAACATTAGTTAAACATCCGTTCA
TCATAAGTTGACAGGAAAATAATTGTGCATCAATAGGGAACAAATAATGTAACCATTAAGTAAT
AAGGGAATTAATGTTTAAACATACCTATCAACTCTGCGTAGAAAAGTCTCTGCTACCTTATCAT
CTGTAGTGACGATACAATCTGTATGAGCACTGAAACAGATAGAATATGGAAATTTGGGTTACAT
TGAATCTCATTTTTTGTTTAAGAAAACAACTAGTACTATGGGATAAGGGGGAGACAGGAGTCAC
AACTATTAGGTACCTTCCATAACGATGAATATGGTCAATTGCTGATTGAACATCATCAACAAAC
TCAACAGTGCAGGCCATAGAACTATACTCATGATGAAATGAAACAGCTTTTGGAAATCCCAGAG
CTTTGTGCGCAATAGGTCCACCATAAATATTAACTCCTGAAATATACAGCATTATCTAAGAAGC
AGGGAGAAAATCATGGCCCTGTATATACAAGTAAAAAACAATCCAGTATCCAGAAACATACTAC
ATCTGTGATTATGTCATGTTACTTTGGTTGCTTTTAGCATCGAAGTAGTTTCTATATACATGCT
TGTTAACCAATCACAATGTAACCAATCAAACTTGGTTGGAAATTGTTGCCATAAGAGAAGGGTC
GCGTTTGTATTCATATATTTTCAAGATTTTTTGTTGTTTGTAATGGTATTTATCACCATTAAAT
CACAGTGGTTGGTAATTTAAAGTTGCAACTGTTTGTGATGGTATTGAGCAAAATTGCTTCAGAG
GGGAGCCGTTTCTATAGTATAAGAGAGTAGAAAAACAAACCTTCTGTTTTTAGTGCTACTAATA
TGTCGTCAAGGCCTGGACTCTTCATAAGATCCTTATGAACTAGTAAGGTCTCCTGCAGAACATA
CATGTAAAATAGGCTGTTATCTGAATATAAAAAATGGCTACATGATGTTCAGAAAAATTATAAG
GTGGAATTATCAACATGCTGAAAACAGTAGAAGACTATCAAGATATGTAGCTAAATTTTCTTAC
AAAGGAAAGAGGAAGTTACTACTTTGTAAGAATAAGCATTATGCAATCACAATATAAGTAGTTA
TAAATCAATTTAAACAATTCAAAAGTGCAGTTATAACTATCATCTATCAATAAAAATAGTTTGC
ATGAGATAGAAGTGGAGGGGCTGTAATAATCTCAACAGTACTAAATGCATTTTTCAGATGCCAG
AGAAGAATTGCAACCAGAGCATCATGGTTAGAAGAGAATTTGAAATTGTCCAAAATATTCAGTG
AAAGATACTCCAAAAAGTAACTGAAACTGTAAAAGCAATCTATTTGAATACTATACACGGTAGC
AAACTGGATAGATACCATTGCATTGCAGGCTGCTGGGTAATCAATTTTTGCATCCATTACAATA
TGTTTTGCCATATCCATGTCAGCTGATTTGTCAATATATACGTGGCATATACCATCTGCAGTGG
GGAAATATGGAATGTCAGAAATAGCAAAAAGAAAAAAAAACTCAACATCCAATAAAGCCATAAG
AGTGGTAAGAACTTAAGTTCAAACAGAATTTACCAGCATGCCCAAGAACAGGAATCTTAGTTGA
CGCCTTGATTTGAGAGACAAGCTTATTACTTCCTCTTGGAATGACAAGATCAATGACATCATCA
AGCTGCACAGTGTATTACGGGTTTAGCCAAATTGGTAGTATCAACGCTTTGAAAATATAGAATT
GCATACACACCTTTAGCAAATCTGCGATCTCATCTCTAGTTGTAACAAGGCCAATAAGTTTTTC
ACCAACATTACGAGGAATAGCATCAGTTATAACCTAGAAAAGAATAAATCGATGTTTTTTACAA
CAGTTAAAGCAAAACCAGAAAGCAATTTTAACCACAAGATAAAAGGATAATACCTTATGCAATA
TCGTGTTTGATCTGATAGCTTCTTTTCCACCTTTTAGGAGAAGACCATTACCACTTCGAATTGC
CAAAGATGCAATCTAACAACAATGACACAAAATTAGTTACTTAGAAGTATATGTATTCTGGAAA
AGAATGGAACACAGTGCATTGCCAGAACAAAATACCTGAACCAAGGCATCAGGTCGGGACTCAA
AAACAATTAAGAGAACACCTAATGGGCAAGATGTTTTCTCAAGAACTAAATCATCAGCAACCTG
GCAAAGGGGAAATCTTTTTGTTAAAATCACTATGGATATATCATCTAGAATCTAGAATTTCTGT
GAAATCTCATAGCAGATTTCTATTAAAAAGAGTTTCTATTAAAAAGGCTGGCATTCACCTCTGT
CTTTTTAAGTATCTGGTTTATAGGGTCTTCCATATTTGCAAGGGTACGAATAGATTTTGCAAGG
CTTGCTATCTGCAAAAACATAAAATATAATATGAGTTAAACAAGACAACATACATAAGAAAAGA
GAAGTGTCAGATATTTAACAAATCAGTTAATTTGGCAAGGAAAATGAGGGGTCCACCTTTCCTG
GTTTTATAGTCAATCTAGCAACCAAAGGCTTCTCATATCCAGCAACTTGGGCCGCAGCTACATC
AGCTTCATTCTCAGACCTTATTAAATCCTCATTTGCCTCCAAAGCATCTGCAACATCTAGCAAT
ATCTTTTTTCGTTCCTCTGATGACAAATT
						
					

			
		

Sequences
Splice junction sequence	CTACATCAGCTTCATTCTCAGACCTTATTAAATCCTCATTTGCCTCCAAAGCATCTGCAACATC TAGCAATATCTTTTTTCGTTCCTCTGATGACAAATTcatcgtgtagttaagagaccttcaacac ccactggtccacgggcatggatacgccctgtgcttatgccaacctattcaagatattccaataa gttcagca
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CATCGTGTAGTTAAGAGACCTTCAACACCCACTGGTCCACGGGCATGGATACGCCCTGTGCTTA TGCCAACCTATTCAAGATATTCCAATAAGTTCAGCAATTAAGAAAGAAAGGTAAATGGCATGTA AAATTTGAAGTACCTCAGCACCCAATCCAAAACGAGCCCCATCAGAGAATCTCGTACTTGCATT ATGAAATACAGCAGCACTGTTCAAATTGAGAAGTAGAACAGAACATTAGTTAAACATCCGTTCA TCATAAGTTGACAGGAAAATAATTGTGCATCAATAGGGAACAAATAATGTAACCATTAAGTAAT AAGGGAATTAATGTTTAAACATACCTATCAACTCTGCGTAGAAAAGTCTCTGCTACCTTATCAT CTGTAGTGACGATACAATCTGTATGAGCACTGAAACAGATAGAATATGGAAATTTGGGTTACAT TGAATCTCATTTTTTGTTTAAGAAAACAACTAGTACTATGGGATAAGGGGGAGACAGGAGTCAC AACTATTAGGTACCTTCCATAACGATGAATATGGTCAATTGCTGATTGAACATCATCAACAAAC TCAACAGTGCAGGCCATAGAACTATACTCATGATGAAATGAAACAGCTTTTGGAAATCCCAGAG CTTTGTGCGCAATAGGTCCACCATAAATATTAACTCCTGAAATATACAGCATTATCTAAGAAGC AGGGAGAAAATCATGGCCCTGTATATACAAGTAAAAAACAATCCAGTATCCAGAAACATACTAC ATCTGTGATTATGTCATGTTACTTTGGTTGCTTTTAGCATCGAAGTAGTTTCTATATACATGCT TGTTAACCAATCACAATGTAACCAATCAAACTTGGTTGGAAATTGTTGCCATAAGAGAAGGGTC GCGTTTGTATTCATATATTTTCAAGATTTTTTGTTGTTTGTAATGGTATTTATCACCATTAAAT CACAGTGGTTGGTAATTTAAAGTTGCAACTGTTTGTGATGGTATTGAGCAAAATTGCTTCAGAG GGGAGCCGTTTCTATAGTATAAGAGAGTAGAAAAACAAACCTTCTGTTTTTAGTGCTACTAATA TGTCGTCAAGGCCTGGACTCTTCATAAGATCCTTATGAACTAGTAAGGTCTCCTGCAGAACATA CATGTAAAATAGGCTGTTATCTGAATATAAAAAATGGCTACATGATGTTCAGAAAAATTATAAG GTGGAATTATCAACATGCTGAAAACAGTAGAAGACTATCAAGATATGTAGCTAAATTTTCTTAC AAAGGAAAGAGGAAGTTACTACTTTGTAAGAATAAGCATTATGCAATCACAATATAAGTAGTTA TAAATCAATTTAAACAATTCAAAAGTGCAGTTATAACTATCATCTATCAATAAAAATAGTTTGC ATGAGATAGAAGTGGAGGGGCTGTAATAATCTCAACAGTACTAAATGCATTTTTCAGATGCCAG AGAAGAATTGCAACCAGAGCATCATGGTTAGAAGAGAATTTGAAATTGTCCAAAATATTCAGTG AAAGATACTCCAAAAAGTAACTGAAACTGTAAAAGCAATCTATTTGAATACTATACACGGTAGC AAACTGGATAGATACCATTGCATTGCAGGCTGCTGGGTAATCAATTTTTGCATCCATTACAATA TGTTTTGCCATATCCATGTCAGCTGATTTGTCAATATATACGTGGCATATACCATCTGCAGTGG GGAAATATGGAATGTCAGAAATAGCAAAAAGAAAAAAAAACTCAACATCCAATAAAGCCATAAG AGTGGTAAGAACTTAAGTTCAAACAGAATTTACCAGCATGCCCAAGAACAGGAATCTTAGTTGA CGCCTTGATTTGAGAGACAAGCTTATTACTTCCTCTTGGAATGACAAGATCAATGACATCATCA AGCTGCACAGTGTATTACGGGTTTAGCCAAATTGGTAGTATCAACGCTTTGAAAATATAGAATT GCATACACACCTTTAGCAAATCTGCGATCTCATCTCTAGTTGTAACAAGGCCAATAAGTTTTTC ACCAACATTACGAGGAATAGCATCAGTTATAACCTAGAAAAGAATAAATCGATGTTTTTTACAA CAGTTAAAGCAAAACCAGAAAGCAATTTTAACCACAAGATAAAAGGATAATACCTTATGCAATA TCGTGTTTGATCTGATAGCTTCTTTTCCACCTTTTAGGAGAAGACCATTACCACTTCGAATTGC CAAAGATGCAATCTAACAACAATGACACAAAATTAGTTACTTAGAAGTATATGTATTCTGGAAA AGAATGGAACACAGTGCATTGCCAGAACAAAATACCTGAACCAAGGCATCAGGTCGGGACTCAA AAACAATTAAGAGAACACCTAATGGGCAAGATGTTTTCTCAAGAACTAAATCATCAGCAACCTG GCAAAGGGGAAATCTTTTTGTTAAAATCACTATGGATATATCATCTAGAATCTAGAATTTCTGT GAAATCTCATAGCAGATTTCTATTAAAAAGAGTTTCTATTAAAAAGGCTGGCATTCACCTCTGT CTTTTTAAGTATCTGGTTTATAGGGTCTTCCATATTTGCAAGGGTACGAATAGATTTTGCAAGG CTTGCTATCTGCAAAAACATAAAATATAATATGAGTTAAACAAGACAACATACATAAGAAAAGA GAAGTGTCAGATATTTAACAAATCAGTTAATTTGGCAAGGAAAATGAGGGGTCCACCTTTCCTG GTTTTATAGTCAATCTAGCAACCAAAGGCTTCTCATATCCAGCAACTTGGGCCGCAGCTACATC AGCTTCATTCTCAGACCTTATTAAATCCTCATTTGCCTCCAAAGCATCTGCAACATCTAGCAAT ATCTTTTTTCGTTCCTCTGATGACAAATT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.149870471

Conservation Information
Conserved circRNAs	NA
PMCS	0.149870471

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							22375001-22374998(-)
						
						Potential amino acid sequence
						
							MNLSSEERKKILLDVADALEANEDLIRSENEADVAAAQVAGYEKPLVARLTIKPGKIASLAKSI
RTLANMEDPINQILKKTEVADDLVLEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKG
GKEAIRSNTILHKVITDAIPRNVGEKLIGLVTTRDEIADLLKLDDVIDLVIPRGSNKLVSQIKA
STKIPVLGHADGICHVYIDKSADMDMAKHIVMDAKIDYPAACNAMETLLVHKDLMKSPGLDDIL
VALKTEGVNIYGGPIAHKALGFPKAVSFHHEYSSMACTVEFVDDVQSAIDHIHRYGSAHTDCIV
TTDDKVAETFLRRVDSAAVFHNASTRFSDGARFGLGAEVGISTGRIHARGPVGVEGLLTTR*(-
)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	22375001-22374998(-)
Potential amino acid sequence	MNLSSEERKKILLDVADALEANEDLIRSENEADVAAAQVAGYEKPLVARLTIKPGKIASLAKSI RTLANMEDPINQILKKTEVADDLVLEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKG GKEAIRSNTILHKVITDAIPRNVGEKLIGLVTTRDEIADLLKLDDVIDLVIPRGSNKLVSQIKA STKIPVLGHADGICHVYIDKSADMDMAKHIVMDAKIDYPAACNAMETLLVHKDLMKSPGLDDIL VALKTEGVNIYGGPIAHKALGFPKAVSFHHEYSSMACTVEFVDDVQSAIDHIHRYGSAHTDCIV TTDDKVAETFLRRVDSAAVFHNASTRFSDGARFGLGAEVGISTGRIHARGPVGVEGLLTTR*(- )
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os05g0455500_circ_g.2

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