Plant Circular RNA Database

Detail information of Os06g0113950_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os06g0113950_circ_g.1
					
						ID in PlantcircBase
						osa_circ_029394
					
						Alias
						Os_ciR1173
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 806806-808884  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRI, circRNA_finder, find_circ
					
						Parent gene
						
							Os06g0113950						
					
						Parent gene annotation
						
							Hypothetical conserved gene. (Os06t0113950-01);Similar to RuBisC
O large subunit-binding protein subunit beta. (Os06t0113950-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os06g0113900_circ_ag.1 						
					
						Support reads
						15/2
					
						Tissues
						root/seed
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0113950-02:6
Os06t0113950-01:6

General Information
CircRNA Name	Os06g0113950_circ_g.1
ID in PlantcircBase	osa_circ_029394
Alias	Os_ciR1173
Organism	Oryza sativa
Position	chr6: 806806-808884 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRI, circRNA_finder, find_circ
Parent gene	Os06g0113950
Parent gene annotation	Hypothetical conserved gene. (Os06t0113950-01);Similar to RuBisC O large subunit-binding protein subunit beta. (Os06t0113950-02)
Parent gene strand	-
Alternative splicing	Os06g0113900_circ_ag.1
Support reads	15/2
Tissues	root/seed
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0113950-02:6 Os06t0113950-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCAACAGAGGTTATTTTCAGCACATAACCATGCTCATAGCCTCTGATCATGTTGCCAATCCTAT
ATACATTGTGACATCAGCAAGCACATTGTTTCGGACcagagctagctgccattggtttgcaggt
tgcagaagaccaggtgtacgttctcgctctctatggcgtcgacaaccacgtctcaactctcaag
ccaggaat

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 180
Transcript exons: 806806-806920,808820-808884
CAGAGCTAGCTGCCATTGGTTTGCAGGTTGCAGAAGACCAGGTGTACGTTCTCGCTCTCTATGG
CGTCGACAACCACGTCTCAACTCTCAAGCCAGGAATGTCTTAATTTGCCACATAGCCTCTGATC
ATGTTGCCAATCCTATATACATTGTGACATCAGCAAGCACATTGTTTCGGAC
Transcript length: 203
Transcript exons: 806806-806950,808827-808884
CAGAGCTAGCTGCCATTGGTTTGCAGGTTGCAGAAGACCAGGTGTACGTTCTCGCTCTCTATGG
CGTCGACAACCACGTCTCAACTCTCAAGCCAGGAATGTCTTAATTTGCCACCAATGCAGAATGC
TCCAAGCGACACCTCAACTGATCATGTTGCCAATCCTATATACATTGTGACATCAGCAAGCACA
TTGTTTCGGAC
						
					

						Genomic sequence
						
							CAGAGCTAGCTGCCATTGGTTTGCAGGTTGCAGAAGACCAGGTGTACGTTCTCGCTCTCTATGG
CGTCGACAACCACGTCTCAACTCTCAAGCCAGGAATGTCTTAATTTGCCACCAATGCAGAATGC
TCCAAGCGACACCTCAACTCACCGCCTATTATGTTCCTTTTGCAAAAGTAACTCTCTAAGCACA
AATAATAAGTAAAAAGATTTAGGGTATGGATATGTAAGTGAAAGGTTAATGTTTCGTACTATCA
AACATCTTAAACTGACCAAGAAAACACTACTACGGGGCTAATGAGTAATGAGCTCATCAGAATG
AAAAATAAAATGACTAATAAAAGAAAAAGGAGAAAAATAGTTAACAAAAATTATTGTGAGTATT
TGAGCATGGCTTAAATGAAATGATAAGATCCATACAGTAACCAGGAACTAGAATTCATCAAATA
ATGGCATGCCTTAGAGCAGGTACAATAGAAGGCTATAAACTAGCTGTAAACATATTTTAAAAAG
ATAAAAGAAGATAGAGAAAAGCAGCAGACTATAGATTTGTAGCCAGCTACAGCACGGACTCCAA
AACGTAATGTGCGTATGGTAGGTGGGACCAGATATTAATAGTATAGTAAACAAATATTATATGA
ATTGGCTATTAAATTGACTATATATGAATTAGAGCTAGCAATGGACTATACTATAAAACTTGCT
CTTAGTGGGGTCAATAGTCCCAGCAACCATTAAGTCCTCGTACTTGCCAGTAGCAGCATTAAGT
TGTCATTAGCAAGAACCTGACTGTAGAGATCTAATAGTATTATTTTCAGTAGTACGCAGCCGCA
TAATATTGAATCATGCATTAATAATGCTTGGAGTAACTAAAATGGTGTTCAAACTTCAAACCTT
TTCAGGGATTATACTGAAGGCCTTCCTTACAATTTCAACCTCAACCTACAGGAAGGGCGATACG
ATCTGTTGTTAATTGACCAAAAAGGTTCTACAATATGCCACCATGAAAATAATCTCCACCAAAG
AAAATAAGATGAACCCATAAATAATCACTTTCGATGTGTCGCAAAAATGATAGCTTCATTCACC
CACCTTCTGCTAATCATTCTCGAGATTCTATGATGAAGTCAACTTTAGATGCCAGCCTCAAAAG
AGTATAGACACCAGCAACAGCAATAGCTTTCTCCACTGCATCCTAGCAAGAAAGCAAACAACTA
ACTGAATTAGCAGTGGATTACAAAAGAAAGTAGTGCAACTAAGACAATAATGCAGTTCATAAAA
GTGCCAGAAGTATATGAACTGACACTGCTAAATGCTGACACAGGGAATTTGACGGCTGATGAAC
AATACATGCACCACGAGTGATGGATTGAAGATCTAAAAAGAACATTCACCTTCTGATATGGACT
ATAGTGGGTACCAACCATAACACTTCCATTGCATTCAAAGCATCTTCCACCCAAAATTTCTTCT
CCTTTGAGCTCACTTTCAGCCTGCATGCCAATCGTAGTAATAAGTGCAAGCAGGAAGATCAGAA
ATTGAGAAATATAGATACAGAATCTGACTGAAAGAGTGTAGGGGGGGGGGGGGTTAGAGTGTAT
CTCCACTTGACTATTCACATTACATAGAGTTGTATTCTTGAAAGAAAAAAACAGTATATAGATG
TTGAAGCTCATATCACCTCCAATTGGAAAGTGATATCATCCAGGTTTTCTTGCAGTCTCCATAC
TCCGATACACTTCCAATCTTATTGGCCACAAGGACTGGATTGAAACAGTGTCCTGATCAATATT
ACCAGCAATTAACAGAACTGGATGCCCACATTTTATGCCATTTTCCAGAATACTGATATCTGCG
ACTAAGCAATTGGAAGATAATACCAGTTAGACGATAATATCGTAGTTTTCATGCTCAACTGATC
TATTTTTCACTAACTATTACAAACTATGGAGAATAACCCAATCAAACTGCCTACCATCACCAAC
AGAGGTTATTTTCAGCACATAACCATGCTCATAGCCTCTGATCATGTTGCCAATCCTATATACA
TTGTGACATCAGCAAGCACATTGTTTCGGAC
						
					

			
		

Sequences
Splice junction sequence	CCAACAGAGGTTATTTTCAGCACATAACCATGCTCATAGCCTCTGATCATGTTGCCAATCCTAT ATACATTGTGACATCAGCAAGCACATTGTTTCGGACcagagctagctgccattggtttgcaggt tgcagaagaccaggtgtacgttctcgctctctatggcgtcgacaaccacgtctcaactctcaag ccaggaat
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 180 Transcript exons: 806806-806920,808820-808884 CAGAGCTAGCTGCCATTGGTTTGCAGGTTGCAGAAGACCAGGTGTACGTTCTCGCTCTCTATGG CGTCGACAACCACGTCTCAACTCTCAAGCCAGGAATGTCTTAATTTGCCACATAGCCTCTGATC ATGTTGCCAATCCTATATACATTGTGACATCAGCAAGCACATTGTTTCGGAC Transcript length: 203 Transcript exons: 806806-806950,808827-808884 CAGAGCTAGCTGCCATTGGTTTGCAGGTTGCAGAAGACCAGGTGTACGTTCTCGCTCTCTATGG CGTCGACAACCACGTCTCAACTCTCAAGCCAGGAATGTCTTAATTTGCCACCAATGCAGAATGC TCCAAGCGACACCTCAACTGATCATGTTGCCAATCCTATATACATTGTGACATCAGCAAGCACA TTGTTTCGGAC
Genomic sequence	CAGAGCTAGCTGCCATTGGTTTGCAGGTTGCAGAAGACCAGGTGTACGTTCTCGCTCTCTATGG CGTCGACAACCACGTCTCAACTCTCAAGCCAGGAATGTCTTAATTTGCCACCAATGCAGAATGC TCCAAGCGACACCTCAACTCACCGCCTATTATGTTCCTTTTGCAAAAGTAACTCTCTAAGCACA AATAATAAGTAAAAAGATTTAGGGTATGGATATGTAAGTGAAAGGTTAATGTTTCGTACTATCA AACATCTTAAACTGACCAAGAAAACACTACTACGGGGCTAATGAGTAATGAGCTCATCAGAATG AAAAATAAAATGACTAATAAAAGAAAAAGGAGAAAAATAGTTAACAAAAATTATTGTGAGTATT TGAGCATGGCTTAAATGAAATGATAAGATCCATACAGTAACCAGGAACTAGAATTCATCAAATA ATGGCATGCCTTAGAGCAGGTACAATAGAAGGCTATAAACTAGCTGTAAACATATTTTAAAAAG ATAAAAGAAGATAGAGAAAAGCAGCAGACTATAGATTTGTAGCCAGCTACAGCACGGACTCCAA AACGTAATGTGCGTATGGTAGGTGGGACCAGATATTAATAGTATAGTAAACAAATATTATATGA ATTGGCTATTAAATTGACTATATATGAATTAGAGCTAGCAATGGACTATACTATAAAACTTGCT CTTAGTGGGGTCAATAGTCCCAGCAACCATTAAGTCCTCGTACTTGCCAGTAGCAGCATTAAGT TGTCATTAGCAAGAACCTGACTGTAGAGATCTAATAGTATTATTTTCAGTAGTACGCAGCCGCA TAATATTGAATCATGCATTAATAATGCTTGGAGTAACTAAAATGGTGTTCAAACTTCAAACCTT TTCAGGGATTATACTGAAGGCCTTCCTTACAATTTCAACCTCAACCTACAGGAAGGGCGATACG ATCTGTTGTTAATTGACCAAAAAGGTTCTACAATATGCCACCATGAAAATAATCTCCACCAAAG AAAATAAGATGAACCCATAAATAATCACTTTCGATGTGTCGCAAAAATGATAGCTTCATTCACC CACCTTCTGCTAATCATTCTCGAGATTCTATGATGAAGTCAACTTTAGATGCCAGCCTCAAAAG AGTATAGACACCAGCAACAGCAATAGCTTTCTCCACTGCATCCTAGCAAGAAAGCAAACAACTA ACTGAATTAGCAGTGGATTACAAAAGAAAGTAGTGCAACTAAGACAATAATGCAGTTCATAAAA GTGCCAGAAGTATATGAACTGACACTGCTAAATGCTGACACAGGGAATTTGACGGCTGATGAAC AATACATGCACCACGAGTGATGGATTGAAGATCTAAAAAGAACATTCACCTTCTGATATGGACT ATAGTGGGTACCAACCATAACACTTCCATTGCATTCAAAGCATCTTCCACCCAAAATTTCTTCT CCTTTGAGCTCACTTTCAGCCTGCATGCCAATCGTAGTAATAAGTGCAAGCAGGAAGATCAGAA ATTGAGAAATATAGATACAGAATCTGACTGAAAGAGTGTAGGGGGGGGGGGGGTTAGAGTGTAT CTCCACTTGACTATTCACATTACATAGAGTTGTATTCTTGAAAGAAAAAAACAGTATATAGATG TTGAAGCTCATATCACCTCCAATTGGAAAGTGATATCATCCAGGTTTTCTTGCAGTCTCCATAC TCCGATACACTTCCAATCTTATTGGCCACAAGGACTGGATTGAAACAGTGTCCTGATCAATATT ACCAGCAATTAACAGAACTGGATGCCCACATTTTATGCCATTTTCCAGAATACTGATATCTGCG ACTAAGCAATTGGAAGATAATACCAGTTAGACGATAATATCGTAGTTTTCATGCTCAACTGATC TATTTTTCACTAACTATTACAAACTATGGAGAATAACCCAATCAAACTGCCTACCATCACCAAC AGAGGTTATTTTCAGCACATAACCATGCTCATAGCCTCTGATCATGTTGCCAATCCTATATACA TTGTGACATCAGCAAGCACATTGTTTCGGAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_016923 						
					
						PMCS
						0.328537057

Conservation Information
Conserved circRNAs	osi_circ_016923
PMCS	0.328537057

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os06g0113950_circ_g.1

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