Detail information of Os04g0334700_circ_ag.1


General Information
CircRNA Name Os04g0334700_circ_ag.1
ID in PlantcircBase osa_circ_023422
Alias NA
Organism Oryza sativa
Position chr4: 15653323-15815820  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0337000_circ_igg.1
Support reads 3
Tissues anther
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGTCATGTTGCATGGTGGTCGCGAAGTGCATATTGTATCGTCACATTTCACCTCTTTTGAACT
TACTGAGCTCCTAGGGTCATAAAATGTCAGCTTTCTcaatatgtcgctctcgtgagggcattgc
ttgcaggagatgccattaacccaaaatgccttactaccggtgtccaactgcacatagtacttca
cggcgggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osi_circ_005382*
PMCS 0.084298986
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2868 osa-miR414 osa-miR2105 osa-miR2105 osa-miR11339-3p osa-miR11339-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017