Detail information of Os03g0227000_circ_g.1


General Information
CircRNA Name Os03g0227000_circ_g.1
ID in PlantcircBase osa_circ_018630
Alias NA
Organism Oryza sativa
Position chr3: 6677724-6678654  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0227000
Parent gene annotation Similar to Coatomer gamma subunit (Gamma-coat protein) (Gamma-CO
P). (Os03t0227000-01)
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0227000-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAATCCAGAAATCGTGAAAAGATGGAGCAACGAAGTGCAGGAAGCTGTTCAATCAAGATTTGCA
CTTGTGCAATTTCATGGCCTAGCTCTTCTTCACCAGttgagtactcgccattttatgggattga
gaagggagccgttctgcaggaggcaagggctttccatgatccgcagcttgatgccaggaagtgc
tcgcaagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGAGTACTCGCCATTTTATGGGATTGAGAAGGGAGCCGTTCTGCAGGAGGCAAGGGCTTTCCA
TGATCCGCAGCTTGATGCCAGGAAGTGCTCGCAAGTAAGTGTTTCTTGCATGACCTCTCTCATT
TTCATATCAGTTCTGAGTATTGTGTTCAGATGTATGTTTCACCCTCTTGTTATTCATTATTATG
GCTTTGCTCTTTGTTTGATGTGTCTTGGAATTTCTCAGGTCATCACTAAGCTATTGTATTTACT
CAACCAAGGGGAGACATTCACAAAGGTAGGATACTACATCTCGTGCAACCAAACTTGCCTTATG
CTCTCAATGCCCTGATGGATTTGCTTCTGATGTAGGTTGAGGCCACAGAAGTTTTCTTTGCAGT
AACAAAGCTGTTCCAGTCCAAGGATGCTGGTCTTAGGCGGCTGGTGTATTTAATGATCAAAGAG
CTTTCACCATCATCAGATGAGGTCAAAGGAAACTGTTTTTAGATCCATGAATTATAACTTGTTT
CTTGTATTGTCATTCTAAATTGTTTGAATTTTACACAACAGGTTATCATAGTCACAAGCTCATT
AATGAAAGATATGAACAGCAAGACGGATATGTACCGTGCCAATGCTATCAGAGTTCTGTGTAGA
ATAATTGATGGCACCCTCCTTACTCAAATTGAGAGATATTTGAAACAAGCTATAGTTGATAAGA
ATCCTGTGGTTGCTAGTGCTGCTCTTGTTAGTGGCATCCATCTGCTTCAGGTACACTTCTATAG
TTCTATACGAAAAAAAACATAATTCTTTTCGGAAGTCAAAAACTGTACTTATTATATGCAGGCA
AATCCAGAAATCGTGAAAAGATGGAGCAACGAAGTGCAGGAAGCTGTTCAATCAAGATTTGCAC
TTGTGCAATTTCATGGCCTAGCTCTTCTTCACCAG
Conservation Information
Conserved circRNAs osi_circ_014084
PMCS 0.211786108
Functional Information
Coding potential Y
Potential coding position 6678577-6678106(+)
6678161-6678106(+)
6677790-6678650(-)
Potential amino acid sequence MEQRSAGSCSIKICTCAISWPSSSSPVEYSPFYGIEKGAVLQEARAFHDPQLDARKCSQVITKL
LYLLNQGETFTKVEATEVFFAVTKLFQSKDAGLRRLVYLMIKELSPSSDEVIIVTSSLMKDMNS
KTDMYRANAIRVLCRIIDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQANPEIVKRWSN
EVQEAVQSRFALVQFHGLALLHQLSTRHFMGLRREPFCRRQGLSMIRSLMPGSARKSSLSYCIY
STKGRHSQRLRPQKFSLQ*(+)
MIKELSPSSDEVIIVTSSLMKDMNSKTDMYRANAIRVLCRIIDGTLLTQIERYLKQAIVDKNPV
VASAALVSGIHLLQANPEIVKRWSNEVQEAVQSRFALVQFHGLALLHQLSTRHFMGLRREPFCR
RQGLSMIRSLMPGSARKSSLSYCIYSTKGRHSQRLRPQKFSLQ*(+)
MESPCLLQNGSLLNPIKWRVLNW*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017