Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0227000_circ_g.1 |
ID in PlantcircBase | osa_circ_018630 |
Alias | NA |
Organism | Oryza sativa |
Position | chr3: 6677724-6678654 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os03g0227000 |
Parent gene annotation |
Similar to Coatomer gamma subunit (Gamma-coat protein) (Gamma-CO P). (Os03t0227000-01) |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os03t0227000-01:5 |
Conservation Information | |
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Conserved circRNAs | osi_circ_014084 |
PMCS | 0.211786108 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6678577-6678106(+) 6678161-6678106(+) 6677790-6678650(-) |
Potential amino acid sequence |
MEQRSAGSCSIKICTCAISWPSSSSPVEYSPFYGIEKGAVLQEARAFHDPQLDARKCSQVITKL LYLLNQGETFTKVEATEVFFAVTKLFQSKDAGLRRLVYLMIKELSPSSDEVIIVTSSLMKDMNS KTDMYRANAIRVLCRIIDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQANPEIVKRWSN EVQEAVQSRFALVQFHGLALLHQLSTRHFMGLRREPFCRRQGLSMIRSLMPGSARKSSLSYCIY STKGRHSQRLRPQKFSLQ*(+) MIKELSPSSDEVIIVTSSLMKDMNSKTDMYRANAIRVLCRIIDGTLLTQIERYLKQAIVDKNPV VASAALVSGIHLLQANPEIVKRWSNEVQEAVQSRFALVQFHGLALLHQLSTRHFMGLRREPFCR RQGLSMIRSLMPGSARKSSLSYCIYSTKGRHSQRLRPQKFSLQ*(+) MESPCLLQNGSLLNPIKWRVLNW*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |