Detail information of BGIOSGA016675_circ_ig.2


General Information
CircRNA Name BGIOSGA016675_circ_ig.2
ID in PlantcircBase osi_circ_014502
Alias Chr03:27918001_27918243(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23162602-23162844  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA016675_circ_ig.1 BGIOSGA014816_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAAACAGAGCACAATCATCTTTGGGTCCAAAAATTTACGGCAAACCTTTGCGACGACGTTGAT
TTGTGAACCAATGACGAGTTTCCTAGATGACATACTactctacgagtctcacagcatagtaaaa
cgtagccagctattactagatacgagtagcattttttaagtcgcaaacaaaagggatacagtcc
cggcttaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACTCTACGAGTCTCACAGCATAGTAAAACGTAGCCAGCTATTACTAGATACGAGTAGCATTTTT
TAAGTCGCAAACAAAAGGGATACAGTCCCGGCTTAAGGGGTGTAAAATCAGCTTCACTATCTTC
ATGTTCGCGGCAACGGGAAACAGAGCACAATCATCTTTGGGTCCAAAAATTTACGGCAAACCTT
TGCGACGACGTTGATTTGTGAACCAATGACGAGTTTCCTAGATGACATACT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021