Detail information of AT2G02950_circ_g.1


General Information
CircRNA Name AT2G02950_circ_g.1
ID in PlantcircBase ath_circ_012621
Alias 2:856168-856310
Organism Arabidpsis thaliana
Position chr2: 856168-856310  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G02950
Parent gene annotation Protein PHYTOCHROME KINASE SUBSTRATE 1
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues seedling
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT2G02950.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTTCTTCACCATTTTCTTCTCATCACCAAACTCCTCTTGTTTTGGATTAATGCTCATGTTTAG
TGTTTTGcttggtctgaatccatgtctccattgaagtacttctcagctccaaacacaccaatct
ctggatcttcaggag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGGTCTGAATCCATGTCTCCATTGAAGTACTTCTCAGCTCCAAACACACCAATCTCTGGATC
TTCAGGAGCTTTCTTCACCATTTTCTTCTCATCACCAAACTCCTCTTGTTTTGGATTAATGCTC
ATGTTTAGTGTTTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.194055477
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020