Detail information of BGIOSGA003622_circ_g.1


General Information
CircRNA Name BGIOSGA003622_circ_g.1
ID in PlantcircBase osi_circ_002103
Alias 1:19913894|19919846
Organism Oryza sativa ssp. indica
Position chr1: 19913894-19919846  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA003622
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA003622_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA003622-TA:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTTTGGAGTCAAAGCATCTCTTGCGAACAAATTTATTGACAAGGCATTGACCTTTAAGCCTAA
GCTCGTTATATTGATTGTCCCAAAGGAAACAAAAAGgtgtttctttgtaataatgccacgtgtg
ggcacttttaccacccaaaatgtgttgcgcgacaacttcattctaaaaacaaaaatgaagcctc
agaactgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 19914442-19919636(-)
19914580-19914303(+)
Potential amino acid sequence MVSDRCVNVSIYLMVQAIDQNSFRKFPSTCNSILIFTIFKGNFCGIITKKHLFVSFGTINITSL
GLKVNALSINLFARDALTPKGGLSPIISLDP*(-)
MVCIQESDRARKISARSSSEQFVVKPDKKKARFLKDTPQPDPCLLKDASTGITKPAKEQGKLLV
TMPSSSTSTKIPQSSFPRVDSETEKRVMALVEREASYLTLKDISRKCLMPSTHAYSGRQVDRII
ATGKLERSVQAVGAALKMLENGGNVNDAKAVCEPEVLKQLTRWHSKLRVYISPFIYGTRYSSFG
RHFTKVEKLVEIVDKLHCYVEPGDTIVDFCCGANDFSRLMKEKLDKVQKKCHFKNYDLIQPQNC
FAFERKDWMTVRPKELPHGSKLIMGLNPPFGVKASLANKFIDKALTFKPKLVILIVPKETKRCF
FVIMPQKFPLKIVKMRMLLHVLGNFRKEF*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021