Detail information of Csa3G910740_circ_g.1


General Information
CircRNA Name Csa3G910740_circ_g.1
ID in PlantcircBase csa_circ_002236
Alias Chr3:39332387_39336293
Organism Cucumis sativus
Position chrChr3: 39332387-39336293  JBrowse»
Reference genome Cucumis sativus v1.5
Type   ue-circRNA
Identification method CIRI2
Parent gene Csa3G910740
Parent gene annotation NA
Parent gene strand +
Alternative splicing Csa3G910740_circ_g.2 Csa3G910740_circ_g.3 Csa3G910740_circ_g.4
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Csa3G910740.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTAACAAAAGCAATGTGTGATAGTGAGGCGTGTCCACTGGATTTATTGACTCCACCAGATGAT
TGCCATTTCAATTATACACTCTCCTTTTCACTTCAAgttagaggacaaattactctatactgtg
gaggcagcattgtttttgggctctctgaatttccaatatcagaatttgaactagttgctgaaga
acttttga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTAGAGGACAAATTACTCTATACTGTGGAGGCAGCATTGTTTTTGGGCTCTCTGAATTTCCAA
TATCAGAATTTGAACTAGTTGCTGAAGAACTTTTGATGAGTGATTCCATCATAACGGTTCGACT
CTTTCTTTTCCATATCAAACTTGTAGATATTTTCATCTACGTTTCTAAATCATGTTTCTTTTGC
GTGTGTTTATTTGTTTCTTCTTATTGTCATTAAAAAAAATGATTTGGGAGTTTCTACCAGACAC
ACACAGAGAGCTGAATGGTAAAATACGATTCCTACTTGAACTGCATGCATCGCCTTGGAATGAA
TCAGGACAGGCCAACTTCAATACTACCACCGCAACTAGACTCCAGTTCGGATCTAAGTTTAATA
CTAGCAGTGGTATTAGTCTTGATTCATCTTTATGAAGTCTTGGTACCATGGACTGGAAGATTGA
TGAAGGAGGCTTCTACCTATCCATACGTTCTACTTTTGCTTGAAAAAGGACGATAAAGAGTACA
TCATAGGGAATTATCTATGGACTGATAATTTTAAAATTTTAGTTTATCAATTAATCAATACCTC
TTTAAATTAATATAAAACTATTTGGTCCTAACATTATTAATTTATAGAGGTTAAGTATGGTGAT
GAAATAGGGGGAGCATTTGCACCCTAGGAAGCACAGATACCGACATGCAACACGGCGACGCGTC
AATTTTAGAAAAAGTAAGACACAACACGTCGGGGAGATGTTATTTTTTTAGTAAAAAAATTAAA
TATATGTTGTTCAACATATTGTGAAATATTTTAATTAAAAACATCAAAATGAGTTGTGGACTAA
AAAATAAAAATAAAAAAGGGGAGAAAGAACTACTGGTTGGCCAAAAATATTTTGTTGAAATAAA
AAAAATGAGTTGTGGACTCAACAAAGCATGAAAAAAATAAAAGAAGTAGGAGAGTAAGAAACTC
GCAAGGAGCACGAAAACTTTGGGGAGCTCGAGGGAGTACTACCGAAGGGAATCGATGATGGATG
TTCTTGCTGGCGGCAAGAGGGTTGGGCAGCGACTGGCAAGCAGAAGGGTGGCAGAGAGAAAAAA
GGGGAGCACGACAAAGGTGGATATAAGAATGAGGATTCTTTATTTAGGCAAGATATTCAAAGTA
TTCCTGGAAAATAACCTTTTAATTGGCACACGGTTGGAAATTCATTGGAGTTACTTGTTTTTCA
AAAGTCAATTCTTTTTCGAGTTGGAATATTAATGCGTGGTTTGGCCACCTACTAGAGGATGCAA
GTTGATTCAACCGCCTATGGGGATCTCAAGAACAGGATGACTTAAGTTTTAGAAAGTGTTAAAA
GTTCTACAACTATTCCTTACTTTTTTCTTATTGTCTCTATGGTGTGCTGTAGGAAATTATTTGC
TACCTTTCATACCAATGGATTTTTGGTGGATCATTCAAAGAGAATGCCACTCAGATATAGGGAA
GTCCTGCGATGAATCCTCATTCTACTTTACTTGCTGGGATTTTGTTTGGAAGGTACCCTCCAAA
GGGTCTTTCATGAAAAATCACTGATGTGGCTCAATGTGAAGTTGCAAGAGTTAATGCATCCACT
TGGAATGCCTATATATATTTTTTTGAAACAAAAACGAGTCTCTTCATTGCATTAATGAAATGAG
ACTAATGCTCAAAGGACAGTGGAAATAGAAAGAGCAAAAGAAATAAAAGGCATAACGGTTGAGG
AGGTGACCCAGGCATCTCAACTAGGTTGACATCTCCTTAGCATCCTCATCATCTCCAGATAAGA
TACCCAATCCTTATAGACTTCCGGTTCAAGTGCAATACAAGAGGATACCAACTAGACTGAAAAC
AAAATTACCGAATGCCTTTATATTTTCATTACTCTTGTTCCGTTATTTATTGCCTTTTATTTTA
TTTTTATATATTGATTTTCTTATCAATCCTTTGGGGAGCTCATATTCTTTGAGTATTTAGTCTC
TTTTCATTTTATTAGTGAAAAAATTTGTATCTAGTTGAAAAAAATGTTGATATCTGTAATCTAA
TTTCTTTTGTAGTATTCTAGATATGAGAATTGAGAGAGTAACAGATCAAGCAAATACTTAACTA
TTTTACTCTAGTGGTTGATTTCCAACACATATTTATTATTTTGATAAGAAACGGAGCTAGACAC
TATCGTTTTGAATTTTAAACGCACTGTCCATATTGTCATATTTTTCCTATCCATTGGATTAGAG
TTCTTAATATAGTTTGTATGACTTCCATTCTTTCTTATGAAATTCCTTTGGAGGAATGCCCTTA
GATCCAATGAGGGGTTTTATTTATTTATTTTTATTTGTATCAATTTCCAAAATGACTTGAATTC
TCTTTGACTGAAGGTTTTTGGCGCCCTTAGAGTTTTTGTTAAGATGCTGCTAATGTGGAACTCT
AAAATCCTGGTAGATGGTGGTAGGAACACGTTTGTTACTGCTTCAGTTCTTGAAGTCAGGAATC
TGGTTGTTTTAAAGGTATTGTCCTTCAAACCTCTTCTACTAACTAAACTACATTAGGGGCAGGG
TTTTATTTATTTATTATTATTATTATGAGTAAGTTTTTGAGTGGCTTTGATTAGCTTGTTATTT
TCTGCTCAGGTTCGTTTTTAGAATTCCATCATATTTATGTTACCTAAGTATAGTCTTTATTTAA
GTTTTAGCTTGTATTTTCCCTTAGTTCTTTTTGCTCTTAGTATAACTCTTTTGTACTTTGAGCT
TTAGTCTCATTATTACTAACAAAGAGGCTTGTTTCCGTTAAAAAAAAAATATTATGATTAAGTT
TTATGTACTTTTATATTTGTAGTCCTTTGGACATCTCCTAATACCTAAGTTCTCCATGATGCCT
AAAATGTTGCAGCAAAATTCAAGCATTAGCTCGAATTCGAACTTGGGAATGTATGGTCAAGGGC
TATTGCATCTGATTGGTGAAGGTGACACGATCAAAGGGCAACGACTATCTTTGTCTCTTTTTTA
TAACATAACAGTAAGCCGTCTTCACATTTTGGAGTTTTTATTATGATCTATTTACAATGGCTTA
TCGGCTTCTAAGTGATTTTCCATCATGATGGAAGCTAATTTTATACATTCTGTCGCTGTTTTAT
AAAATAACTGCAAGTCATCATCATAATATACATAGTTTATCTTGATGGAAGCTGTTTTATACAA
TGGCTTGCAGTTATTTTAAGTACATTTCCAAGACTTGGTACAGTTGTTAATGGGTCATTGTTTT
TCTTCTACACCTCATCTCTTATGGATCAATGCTGTAAAATGTTATCTTGGAACTATAGTTTATC
TTCTGGAAAGGTTATCACCTGAAAGAAAACATCGTCAAACCTAAGGTTTGATCATTTTGAGGTA
GCTCATTTGAAGACCTCTTTTTGATCTTCAAATTCTAAGCTTCTGTTCTTAATTACCTGCTTCA
TTTTACATTTTCCATTCCTTGCATGAATGACATGACATTATCTCAACTGTTAAAAAGACTACCA
TTTTCATCGTCACCTCTTTACCCCACGAAAAAGGGGGAAAAGGAATCTATCGGTACATCTATTT
AAGACTACTGGCAATGACAGGTTGGAACCGGTTCTCTCCTTCAAGCTCCATTGGATGAGGATGA
AAGTAGAAGCCTGTGAGTATGTTTTATTTTATGCCTTTTTGCCCGACTTATTATTTTGTTTTTT
TATAGGTAACAATTATTGAAGAGTGGCATGCTTTCTTTCTCAATCTCTGCAGCATTATAGGATT
GAAATTCTTAGACTCAAGTTTCAATTTGTAGGGTAACAAAAGCAATGTGTGATAGTGAGGCGTG
TCCACTGGATTTATTGACTCCACCAGATGATTGCCATTTCAATTATACACTCTCCTTTTCACTT
CAA
Conservation Information
Conserved circRNAs NA
PMCS 0.096318608
Functional Information
Coding potential Y
Potential coding position 39332487-39336290(+)
39336254-39332465(+)
Potential amino acid sequence MSDSIITVFGALRVFVKMLLMWNSKILVDGGRNTFVTASVLEVRNLVVLKQNSSISSNSNLGMY
GQGLLHLIGEGDTIKGQRLSLSLFYNITVGTGSLLQAPLDEDESRSLVTKAMCDSEACPLDLLT
PPDDCHFNYTLSFSLQVRGQITLYCGGSIVFGLSEFPISEFELVAEELLMSDSIITVFGALRVF
VKMLLMWNSKILVDGGRNTFVTASVLEVRNLVVLKQNSSISSNSNLGMYGQGLLHLIGEGDTIK
GQRLSLSLFYNITVGTGSLLQAPLDEDESRSLVTKAMCDSEACPLDLLTPPDDCHFNYTLSFSL
QVRGQITLYCGGSIVFGLSEFPISEFELVAEELLMSDSIITVFGALRVFVKMLLMWNSKILVDG
GRNTFVTASVLEVRNLVVLKQNSSISSNSNLGMYGQGLLHLIGEGDTIKGQRLSLSLFYNITVG
TGSLLQAPLDEDESRSLVTKAMCDSEACPLDLLTPPDDCHFNYTLSFSLQVRGQITLYCGGSIV
FGLSEFPISEFELVAEELLMSDSIITVFGALRVFVKMLLMWNSKILVDGGRNTFVTASVLEVRN
LVVLKQNSSISSNSNLGMYGQGLLHLIGEGDTIKGQRLSLSLFYNITVGTGSLLQAPLDEDESR
SLVTKAMCDSEACPLDLLTPPDDCHFNYTLSFSLQ
MIAISIIHSPFHFKLEDKLLYTVEAALFLGSLNFQYQNLN*
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to salt stress in root
Other Information
References Zhu et al., 2019