Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G01570_circ_g.1 |
ID in PlantcircBase | ath_circ_035896 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr5: 221607-222669 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT5G01570 |
Parent gene annotation |
unknown protein |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 2 |
Tissues | inflorescences |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT5G00780.1:1 AT5G01570.1:5 AT5G00780.2:1 AT5G01570.2:4 AT5G01570.5:5 AT5G01570.4:4 AT5G01570.3:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.117326465 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
222081-222666(+) |
Potential amino acid sequence |
MYASVTRVIPNIDDSLKTSGYMVGRDKRLMDKFEFDSNKSTSVYETCNERIGEEQILTDLQKKL DVCKEKTDEANSEIADEEEIERLQKELDEELELECKLKEELRFIADELKDLNSQEALFEEHRLA IKRNKRDQLRTETKLPMYASVTRVIPNIDDSLKTSGYMVGRDKRLMDKFEFDSNKSTSVYETCN ERIGEEQILTDLQKKLDVCKEKTDEANSEIADEEEIERLQKELDEELELECKLKEELRFIADEL KDLNSQEALFEEHRLAIKRNKRDQLRTETKLPMYASVTRVIPNIDDSLKTSGYMVGRDKRLMDK FEFDSNKSTSVYETCNERIGEEQILTDLQKKLDVCKEKTDEANSEIADEEEIERLQKELDEELE LECKLKEELRFIADELKDLNSQEALFEEHRLAIKRNKRDQLRTETKLPMYASVTRVIPNIDDSL KTSGYMVGRDKRLMDKFEFDSNKSTSVYETCNERIGEEQILT(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |