Detail information of AT2G03640_circ_g.1


General Information
CircRNA Name AT2G03640_circ_g.1
ID in PlantcircBase ath_circ_012693
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1104969-1105034  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G03640
Parent gene annotation Nuclear transport factor 2 (NTF2) family protein with RNA bindin
g (RRM-RBD-RNP motifs) domain-containing protein
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G03640.3:1
AT2G03640.4:1
AT2G03640.5:1
AT2G03640.2:1
AT2G03640.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAATGCCACAAACCCAATACAGTTCTTTTTTTCctgaaagacattttttactgcttcaccattt
tc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAAAGACATTTTTTACTGCTTCACCATTTTCGAATGCCACAAACCCAATACAGTTCTTTTTT
TC
Conservation Information
Conserved circRNAs NA
PMCS 0.083333333
Functional Information
Coding potential Y
Potential coding position 1105004-1105031(+)
Potential amino acid sequence MPQTQYSSFFPERHFLLLHHFRMPQTQYSSFFPERHFLLLHHFRMPQTQYSSFFPERHFLLLHH
FRMPQTQYSSFF(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017