Plant Circular RNA Database

Detail information of Os05g0150600_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os05g0150600_circ_g.1
					
						ID in PlantcircBase
						osa_circ_042002
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 2908186-2910771  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI-long
					
						Parent gene
						
							Os05g0150600						
					
						Parent gene annotation
						
							Hypothetical conserved gene. (Os05t0150600-01);DNA helicase, ATP
-dependent, RecQ type domain containing protein. (Os05t0150600-0
2)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						root
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0150600-02:6

General Information
CircRNA Name	Os05g0150600_circ_g.1
ID in PlantcircBase	osa_circ_042002
Alias	NA
Organism	Oryza sativa
Position	chr5: 2908186-2910771 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRI-long
Parent gene	Os05g0150600
Parent gene annotation	Hypothetical conserved gene. (Os05t0150600-01);DNA helicase, ATP -dependent, RecQ type domain containing protein. (Os05t0150600-0 2)
Parent gene strand	-
Alternative splicing	NA
Support reads	NA
Tissues	root
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0150600-02:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATGGTAGGACCTTGATCAGCAATTTCTGAGGAACTGGAACCAGTTTTGTTGCATTGAGAAGAAG
ATGCAGAGTTCTCAGGCCACGAGCACTCAAGGAACTataactgcgtcttccttgaaatcatgca
tttgaggagggccattaatacagatgtcacacctgaggtgacaagtcagttagactcataaaat
gcttgatg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 634
Transcript exons: 2908186-2908245,2908512-2908595,2908708-2908807,2909282-
2909345,2909735-2909815,2910340-2910396,2910584-2910771
ATAACTGCGTCTTCCTTGAAATCATGCATTTGAGGAGGGCCATTAATACAGATGTCACACATGC
GGCATCCATCAGGACCAAATTCCTCCCCGAAGTACTTTACTAATATTTTGGCTCTACAAATTGA
AGTGTTCAAAGCATAATGAAAGCAATCACGTAGCATTCTGTATGCTACTTTTGTCTGTTCCTTG
CTTCTTTTATTAGGAAGGAGTGTCGGTGCTCTCAAAAGGTTACAATATAGAGTGCAATCCGCCA
ACTTCCCATCTCTACCAGCACGGCCAGCTTCTTGATAATATGCTTCCAAACTCTGTGGGAAACC
ATAGTGAATAATTCTCCTGACATTTGATTTGTCAATTCCCATGCCAAATGCTATGGTAGCCACC
ACAACCTCCAAGGCATTGCAATGAAACTGTTGATGCACCTGTCTCAAATGTGATTTAGGCATCT
TCGCATTATATGCTGCAGCTTTGAGACCAGTTTTGCACAAATAGTTTGCTAACTCCACAGTTTG
TTTCCTGGTGGGTACGTAAATAATGGTAGGACCTTGATCAGCAATTTCTGAGGAACTGGAACCA
GTTTTGTTGCATTGAGAAGAAGATGCAGAGTTCTCAGGCCACGAGCACTCAAGGAACT
						
					

						Genomic sequence
						
							ATAACTGCGTCTTCCTTGAAATCATGCATTTGAGGAGGGCCATTAATACAGATGTCACACCTGA
GGTGACAAGTCAGTTAGACTCATAAAATGCTTGATGAGATAAATTTGAAATAGAGCCGTTAAAA
ATGCAAGTTCCACAACGACCAATATTTTTTGCAGTAACGTGTGAGCCCACAGCCCCTCATGTCA
ATATTACAGAACATCTTTTAAATATTTGTGATACTACTGTCATACCATTAAGAAATTCGCATCA
CATGAAACTGGAATGAGCATGTATTATTTCATTAAAGGAGAGGAGACATGGAGAAATTAGAGAA
AAGTACATGCGGCATCCATCAGGACCAAATTCCTCCCCGAAGTACTTTACTAATATTTTGGCTC
TACAAATTGAAGTGTTCAAAGCATAACTGCAACATAGAAAATATAAATAAACATTAATCAAGTT
TAGTTGCCAAACATTTTAGCAAATATACATATTACGACATTACCAGAATTTGAACATATGGTTA
CGATACATACTGAAAGCAATCACGTAGCATTCTGTATGCTACTTTTGTCTGTTCCTTGCTTCTT
TTATTAGGAAGGAGTGTCGGTGCTCTCAAAAGGTTACAATATAGAGCTGCATGTAAAATGTATA
GAAATCTCAAAATAAAAACAAGTGACACGTTGAATGGAAAATTAAAGCAAGGCCTAATAATTAT
TCATAAAAGTAGTGCATTAATACTAACATTAATACAACCTTTGGTTTGTAAGATGACTTTGAAT
AAGAAGACAACAACAGGAGATTTTTAGCGTGAAAAGGAATAGATGGGTGATAAGATGTCAGCAA
AACTCTAAACTAACAGCACGGTCAGCTTCCTAATAAAAATAAGGCATGCGAAGCCTTTTGGATG
TAAGTTGTTATTTTCTTATAACTGAAGCTTTTGGATGTAGTAGGAAAATAATTGAAGTTTTTAC
TTGTAACATTATGCTTGTCTGCAAGTTGTTATTTTCTTATAATACGAAACAACGTGGCTTACTT
TTGGATGTAGTAAGAAAATAATTGAAGCTTCCTAATTATAGCAAGTATGAGCTATGGAGTATAA
CAACTCACTGCAATCCGCCAACTTCCCATCTCTACCAGCACGGCCAGCTTCTTGATAATATGCT
TCCAAACTCTGCATCAATCAAGTTCTGACCAGTAAAACTCACGGAAAAGAAGCATAAACATAAA
TTAATCCAATTTGGGATGTATCTGGATTCTTAGAGAACAAAAGCCATATTGTTTCTGCATGTTG
CAGATCAGTAATGCAACCCAACACTAAGCCTTTTGAATATTGTCTCCACCATTCAACAAGAAGA
AGGAAAATGTATAATCAACTCCTACAATTTTCATACTGCACACAGTATCTCCTTCAATTGCCAT
CACTGTTACATTCTAGCTTGGCATCCTACAGGTTCAAGTGTGGAAATCTGTCTGCCATCATCAG
AGTCAGAGCAAGTCTTTGGCAGCATTAGAGAGGCTTCTATGTATTTTCGTGAATGAAGCACTAA
AGGTTAAACCAACCTGTGGGAAACCATAGTGAATAATTCTCCTGACATTTGATTTGTCAATTCC
CATGCCAAATGCTATGGTAGCCACCACAACCTATATAAAGAGGATAAGGCCATTAGAGTTGGGA
TAAAGGCTTGAAGGGTTCACAAAGAGACGGAGATATGAAGAAAATATAGAGAACTTTTACAACC
AAGAATTTGAATGGTACACAATGAATTTGTTCTACAACATTCTTCTAAAAAATCAGTCACCATA
GCAGTCATCCATCCAAGATTGTATCATATTAACAAATAGAAATGTGGAAAGTTTCCTTGTTGGA
TTGTTGAAAAACTTTTAAGTGTCTCAAAACTCAAATACACTGGTTAACCTCTAAGCTTGTGTAA
CCATGGAACAGTACAACACCAGACATCAAGATTTTCAAGATCTCCTAGACAAAAATATGTTACT
GTGGAAGTACATCTGACTGCCTCTACAGAGAAGTAACTTGCTCTAACATTATCACTTTTTCATG
CATACTGTTTTCTCAAACTAAATTTGTATACCATCATATGAGCACATGGAAATTGCACCTAGCA
GTGGCAAGATATAAGCTAGGAAGTGAAACAAGTAATTATTACCTCCAAGGCATTGCAATGAAAC
TGTTGATGCACCTGTCTCAAATGTGATTTAGGCATCTGAAAAAAGAGTCAAATAGCTCAAAACA
AGTTACAGGACTGTGAATAGCAATTAAGAAATAAATATAATCAAATGTACTGTAAGTTACAAAA
AAGCTGATTGCTTCTAGAGAATTAGCATATATCAGGAAATGGGCCCTACTGATCAAGTATCATT
TGCCACACAAATCAATCAAAGAAGATTTACCTTCGCATTATATGCTGCAGCTTTGAGACCAGTT
TTGCACAAATAGTTTGCTAACTCCACAGTTTGTTTCCTGGTGGGTACGTAAATAATGGTAGGAC
CTTGATCAGCAATTTCTGAGGAACTGGAACCAGTTTTGTTGCATTGAGAAGAAGATGCAGAGTT
CTCAGGCCACGAGCACTCAAGGAACT
						
					

			
		

Sequences
Splice junction sequence	ATGGTAGGACCTTGATCAGCAATTTCTGAGGAACTGGAACCAGTTTTGTTGCATTGAGAAGAAG ATGCAGAGTTCTCAGGCCACGAGCACTCAAGGAACTataactgcgtcttccttgaaatcatgca tttgaggagggccattaatacagatgtcacacctgaggtgacaagtcagttagactcataaaat gcttgatg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 634 Transcript exons: 2908186-2908245,2908512-2908595,2908708-2908807,2909282- 2909345,2909735-2909815,2910340-2910396,2910584-2910771 ATAACTGCGTCTTCCTTGAAATCATGCATTTGAGGAGGGCCATTAATACAGATGTCACACATGC GGCATCCATCAGGACCAAATTCCTCCCCGAAGTACTTTACTAATATTTTGGCTCTACAAATTGA AGTGTTCAAAGCATAATGAAAGCAATCACGTAGCATTCTGTATGCTACTTTTGTCTGTTCCTTG CTTCTTTTATTAGGAAGGAGTGTCGGTGCTCTCAAAAGGTTACAATATAGAGTGCAATCCGCCA ACTTCCCATCTCTACCAGCACGGCCAGCTTCTTGATAATATGCTTCCAAACTCTGTGGGAAACC ATAGTGAATAATTCTCCTGACATTTGATTTGTCAATTCCCATGCCAAATGCTATGGTAGCCACC ACAACCTCCAAGGCATTGCAATGAAACTGTTGATGCACCTGTCTCAAATGTGATTTAGGCATCT TCGCATTATATGCTGCAGCTTTGAGACCAGTTTTGCACAAATAGTTTGCTAACTCCACAGTTTG TTTCCTGGTGGGTACGTAAATAATGGTAGGACCTTGATCAGCAATTTCTGAGGAACTGGAACCA GTTTTGTTGCATTGAGAAGAAGATGCAGAGTTCTCAGGCCACGAGCACTCAAGGAACT
Genomic sequence	ATAACTGCGTCTTCCTTGAAATCATGCATTTGAGGAGGGCCATTAATACAGATGTCACACCTGA GGTGACAAGTCAGTTAGACTCATAAAATGCTTGATGAGATAAATTTGAAATAGAGCCGTTAAAA ATGCAAGTTCCACAACGACCAATATTTTTTGCAGTAACGTGTGAGCCCACAGCCCCTCATGTCA ATATTACAGAACATCTTTTAAATATTTGTGATACTACTGTCATACCATTAAGAAATTCGCATCA CATGAAACTGGAATGAGCATGTATTATTTCATTAAAGGAGAGGAGACATGGAGAAATTAGAGAA AAGTACATGCGGCATCCATCAGGACCAAATTCCTCCCCGAAGTACTTTACTAATATTTTGGCTC TACAAATTGAAGTGTTCAAAGCATAACTGCAACATAGAAAATATAAATAAACATTAATCAAGTT TAGTTGCCAAACATTTTAGCAAATATACATATTACGACATTACCAGAATTTGAACATATGGTTA CGATACATACTGAAAGCAATCACGTAGCATTCTGTATGCTACTTTTGTCTGTTCCTTGCTTCTT TTATTAGGAAGGAGTGTCGGTGCTCTCAAAAGGTTACAATATAGAGCTGCATGTAAAATGTATA GAAATCTCAAAATAAAAACAAGTGACACGTTGAATGGAAAATTAAAGCAAGGCCTAATAATTAT TCATAAAAGTAGTGCATTAATACTAACATTAATACAACCTTTGGTTTGTAAGATGACTTTGAAT AAGAAGACAACAACAGGAGATTTTTAGCGTGAAAAGGAATAGATGGGTGATAAGATGTCAGCAA AACTCTAAACTAACAGCACGGTCAGCTTCCTAATAAAAATAAGGCATGCGAAGCCTTTTGGATG TAAGTTGTTATTTTCTTATAACTGAAGCTTTTGGATGTAGTAGGAAAATAATTGAAGTTTTTAC TTGTAACATTATGCTTGTCTGCAAGTTGTTATTTTCTTATAATACGAAACAACGTGGCTTACTT TTGGATGTAGTAAGAAAATAATTGAAGCTTCCTAATTATAGCAAGTATGAGCTATGGAGTATAA CAACTCACTGCAATCCGCCAACTTCCCATCTCTACCAGCACGGCCAGCTTCTTGATAATATGCT TCCAAACTCTGCATCAATCAAGTTCTGACCAGTAAAACTCACGGAAAAGAAGCATAAACATAAA TTAATCCAATTTGGGATGTATCTGGATTCTTAGAGAACAAAAGCCATATTGTTTCTGCATGTTG CAGATCAGTAATGCAACCCAACACTAAGCCTTTTGAATATTGTCTCCACCATTCAACAAGAAGA AGGAAAATGTATAATCAACTCCTACAATTTTCATACTGCACACAGTATCTCCTTCAATTGCCAT CACTGTTACATTCTAGCTTGGCATCCTACAGGTTCAAGTGTGGAAATCTGTCTGCCATCATCAG AGTCAGAGCAAGTCTTTGGCAGCATTAGAGAGGCTTCTATGTATTTTCGTGAATGAAGCACTAA AGGTTAAACCAACCTGTGGGAAACCATAGTGAATAATTCTCCTGACATTTGATTTGTCAATTCC CATGCCAAATGCTATGGTAGCCACCACAACCTATATAAAGAGGATAAGGCCATTAGAGTTGGGA TAAAGGCTTGAAGGGTTCACAAAGAGACGGAGATATGAAGAAAATATAGAGAACTTTTACAACC AAGAATTTGAATGGTACACAATGAATTTGTTCTACAACATTCTTCTAAAAAATCAGTCACCATA GCAGTCATCCATCCAAGATTGTATCATATTAACAAATAGAAATGTGGAAAGTTTCCTTGTTGGA TTGTTGAAAAACTTTTAAGTGTCTCAAAACTCAAATACACTGGTTAACCTCTAAGCTTGTGTAA CCATGGAACAGTACAACACCAGACATCAAGATTTTCAAGATCTCCTAGACAAAAATATGTTACT GTGGAAGTACATCTGACTGCCTCTACAGAGAAGTAACTTGCTCTAACATTATCACTTTTTCATG CATACTGTTTTCTCAAACTAAATTTGTATACCATCATATGAGCACATGGAAATTGCACCTAGCA GTGGCAAGATATAAGCTAGGAAGTGAAACAAGTAATTATTACCTCCAAGGCATTGCAATGAAAC TGTTGATGCACCTGTCTCAAATGTGATTTAGGCATCTGAAAAAAGAGTCAAATAGCTCAAAACA AGTTACAGGACTGTGAATAGCAATTAAGAAATAAATATAATCAAATGTACTGTAAGTTACAAAA AAGCTGATTGCTTCTAGAGAATTAGCATATATCAGGAAATGGGCCCTACTGATCAAGTATCATT TGCCACACAAATCAATCAAAGAAGATTTACCTTCGCATTATATGCTGCAGCTTTGAGACCAGTT TTGCACAAATAGTTTGCTAACTCCACAGTTTGTTTCCTGGTGGGTACGTAAATAATGGTAGGAC CTTGATCAGCAATTTCTGAGGAACTGGAACCAGTTTTGTTGCATTGAGAAGAAGATGCAGAGTT CTCAGGCCACGAGCACTCAAGGAACT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.109369744

Conservation Information
Conserved circRNAs	NA
PMCS	0.109369744

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						this study

circRNA

Detail information of Os05g0150600_circ_g.1

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