Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d019501_circ_g.3 |
ID in PlantcircBase | zma_circ_009260 |
Alias | Zm07circ00029, ZmciR311 |
Organism | Zea mays |
Position | chr7: 37910729-37912353 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d019501 |
Parent gene annotation |
Tetratricopeptide repeat (TPR)-like superfamily protein |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d019501_T004:4 Zm00001d019501_T006:4 Zm00001d019501_T002:4 Zm00001d019501_T005:3 Zm00001d019501_T003:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.301780778 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
37911603-37911532(+) 37912329-37910987(+) 37910890-37912348(-) |
Potential amino acid sequence |
MLLNEATSTGEKKISNLSQNHRQEELIAAQTFVEKLLKESLQKLEEEENVKHSFMRWELGACWV QHLQDQKNSDKDKKQGGEKDKKKTLDKSKEPKIEGLGKPLKALKNAKNVDSADLGSSAGPKSSA ESQKDKPSDVKLPQGESSASENENLLKDLLPESAFTRLKESETGLHQKSPPELIEMALKYYDEV ALPKLFGNFPYGFRANTWLVPPIAAQSPSTFPPLPAEDETWGGSGGGWGRDGKSDMVPWADEFL YLTSMPCKTAEERELRDRRAFLLHSLFVDVAIFRAIAAVRHVMEGTELSASTNIDEVLYSETVG HFSITVTRDSSDASCKMDTKIDGNRATGMDSKDLAERNLLKGITADENTAAHDVDSLGIINLRY CGYVAVAKVDNIDKTKVNASIKPMNIADQPEGGAHALNINRLITRAQQCFYVIL*(+) MMKLHFLSCLEIFLMGFVQIHGLFLQLLRSHHQRFLLFLLRMKHGEAVEVVGEGMERATWCHGQ MNFSISHPCLAKLLRRGNSVTGEHSYFTASL*(+) MAPCRSFHPFPNHLHCLPMFHPQQEEEETLMVTAQQLEEQAMYLHETHKENFQTA*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |