Detail information of PGSC0003DMG400013291_circ_ag.5


General Information
CircRNA Name PGSC0003DMG400013291_circ_ag.5
ID in PlantcircBase stu_circ_001502
Alias chr11:365659|370395
Organism Solanum tuberosum
Position chr11: 365660-370395  JBrowse»
Reference genome 3.0.38
Type   ag-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing PGSC0003DMG400013291_circ_ag.1 PGSC0003DMG400013291_circ_ag.2 PGSC0003DMG400013291_circ_ag.3 PGSC0003DMG400013291_circ_ag.4
Support reads NA
Tissues stem
Exon boundary   No-No
Splicing signals   CT-CC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAATTTTGCAGGGACAACTGTTTGATAAATGACCTTTTTATTATATCTTGCAATTTACGATT
CTTTGCCATATCACAGTAAGATTCCTTTTGAGCAAAcggtgtaatcccacatgtgggtctaggg
aggagggtggtgtgtacgcagccttgcccctaccctgtgaaggtagataggttgtttccgatag
atcctcgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGTGTAATCCCACATGTGGGTCTAGGGAGGAGGGTGGTGTGTACGCAGCCTTGCCCCTACCCT
GTGAAGGTAGATAGGTTGTTTCCGATAGATCCTCGTCTCAAGTAAAGCATAACCAAATCAAATA
CATCAGCAGAGAAGTCATGCTCAAAATAATGAAGAAGAGAACAATAGCAACAACAAATAATACG
AAAACCAAAGCAAAGAAAACATAGGTAATACTGAAGTCGAAGAATACGGTAGTATGAGAGTACT
AATAACAACAAGGATAAGTAACTAGCCAACGCTCAACTACCTACTAATGTTCCACCCTAATCTC
CATCCCCATCCTCCATATCTTCCTATCTAGTCTCATATCATCGGTAAGCTGCAATCTGCATGTG
TGCTAGTAATTTGATGAAATCATGAAATTTTCAAGATTTATCTTTTCTAAACTCTTAATTGAAA
TTGTTTGATATTTGAATACCTTAAAAAAAAATTGTATGATCACATTTTCTTTTTTATCTAGCCC
ATGGCAACTCAGGAAATACTTATGAACATCCTCAATAGGTTACCTGAACGCTCTCTTTTTTTAT
TCACATACAACAACATACCCAATGTAATCCCACAAAGTGAGAAATGAGGAGGATAAAGTGTACG
CAAACCTTAACCCTACCTGGTGTTAAGGAATATTGGAATGCATTTTCTTTATTATACATGATCC
CGGGCTTTTTCACGCCATACAAACTATAGGTTTGAGGATGGTGAACTCCTAATTCAATTCATAC
ATTTTAATATTTTACAACATCAAAGGACCATTTGGATTTTGGCCATACAGTTCAGACTGTTTTC
ATTCAAAAACAACTCAACAGTAAGTAAGAAATCACAACTCACCGGATCAATATCCATCATTATT
TGATGCCTCCCCCAACTTGAAAAGCTTTGCCTCTTCTTCTATTGAGCTTCAATTTGAATTCTAG
GGTTTTTTTATATAGCAGAAGGATTGCGCGGTTTGGGAAATTGGGAATGATAGATGGGCCGGTT
CGGGTTCTCCTCTCTAAATTCAAGTTTTTGCACCGGTCGGATTCTCCCTATTTTCGGGTCTCTT
CCAAATTATATGGTTCAAATCTTAATGAGTCGTGATTTAAAGTTATTGAATTTTAAATCAGCAA
CATATACATAGTCGATGAATTCTCAAGAATATAAAATTTTCCACTAAAGCAATTGAGTTCAATG
AACTAGTAGGCGACATTCTAACTTTACCCTCGACTCTAATTCTTTTCGTATATTTGATATGTAA
TTTCTTATTTCTTTTTTGCAGTGGCATATAATTTACTTTTAACATTATATTTAGTATAATTAAA
TATTTGCTTATGTATGATTGAACCACTTTCTGTTGTTTTTTTGGTTACCATGTTACAACCTCTA
GTTCGGGTCGGGTCATTTTTAGTATACCATATGCAAAGTGAATTACCCAACAGTGATTGCAAGT
AATCACATACGAGATACGACCTATACACAATCATAACATGCTTTTCTAGGCCGCTAAGTCAGGA
ATAGAGTGTTAACGGTAGACATTACATCATGTTCAATGGAATAACGCTAATAGTCAAATAATAG
CAATATACATGCCATAAGAAGCATAATCCATTAAGATCTGCCAAAAAGAGGAATTAAAGCCTTA
ACATATATCTTTCAAACAAAAGCATCAATAAGGTGTTAAGGTCTTCATTACGACCAACCTACTT
TAACTCATCAAAATCTCAACAATAACAACAAGAAGAAGAAGCTATCAATATCTCACAAGAGCGG
TAAGCTCCTGAAGTAATATAACAAGACGTACATTCAAATTATCTCTTGTGAGAATTTCAGTTAC
TGTGCTGGGGAATATTGGAAAAACAAATGTCATTCCTGATGATAACAGAAGCAATGCACTCTTG
TCAATTTCTCACATTCAACAAGCTGAGGAAACCTCTGTTCCTTACACAATGCGTATAGATTCTT
TCTGTAGACACCTAAGAGTTAACAAAAGATATACATGTTTCATTTCTCCAAAACATCTCTGGTT
TCTTTCAAGCCAACTACTCCACATGATGGATAGACGAACACTTCTTTCTCCAAGATATCTGCTG
GTATTAATTTCATGTCCCCCAGACCTGCCAGCTAAAGATGACATTGTACTCCAATACTGGTGAT
AAACTAAGAAGAATACGAGAGTTGTAACATAACAAGAAAAGAAGAAAAAGAGTGTCTCAATCAT
ACATAAGAAACTAATATGTAAGTGATCTTGGAGAAATCAAGCTTTCTGTAAAAGCATGTGCATC
TAATATGATATCACATTGAGGCCATGCTCCAAATGGTCCACTACGTGTCCTTAATCAACCCCCA
ACACCGCACCTGAATAGCACTTCACCATCCGCAAACCTATATTTCGGTATAGCAATAACAATAT
AAGGATCTTCGATAGATAGCAATGGAATCCAAGATTCCTTGATACCATACTCTTTCAATACCCA
TAACTTAATAGTATGCTTACTCTGATCATAAAGAGAATTAGAATGAACACAAAGCATTCCATCC
AACACTGTAATGCCAAAAACATCCCTCGAGACTGAAATTTCCTCCTGTAAGGGAATCTCTCCGT
ACACTTCATTTGAAATACTAAACGAAACCACCACAGCATAATTTCGTGAAATACCAATCCAATG
AAATGCCGCATGTACAAATGTCAAAAACTGCACAGCAAACATCAGAGAGTAAATGCCATGAGGA
TGCTTATCACTTCTTCTCCAAGAGCCACCTTTCAGTGCAAGAATTTCACAAGGTAAATCGAAAC
CCTGATAAATCTGAACAATCCTATACTCACCACTGGTTGAGTCATAACCCAAACCAAAACAAGG
ACTTTTGTCCAGTGGAAATTCTGGAGAAGGAAGTACAATTGATTCTCTTGTGGAGGGGTTCCAC
AGAAAAAATGTGGAGTGTTCATTCAAATTATCAGGAACCTCCATAACAGCCAAGCCATCATAAC
AACAATGGATTGTGCATTGCAATGGTGTAGGGTTTGAAGGGAAATCGAGTTTTTGTACATCCTC
AACCAGCTGAACCGGCGACAAAGGACAACAATACATGGAACATATACCATTCTTACGGCACCTT
AGGCTAGTAAGAAGTTTTTGAGAATCTTGATCATTCTTGGCACGACTGAGATGCTTCATCTTAA
AGTATGGCTCGGAGATCAACGTTTCCCAAAATTTTGACACACATTTGAATCGAAGTAGAGACTG
CACAGGTAACCTGCTAAGGATGTCCATAAGTATTACCTCTGGGAAGTGAACTGCCATGGCCTAG
ATAGGACAAGAAAGAGCGATCAGACAATTTTTTTTCAAGTATTCATATATTAGACATTTCAACC
AAGAGTTCAGAAAAGATAAACCTGAATTTGTTTTATTTCTTCTATCTACTATTTAGTAACAAAT
ATAGAATTGAATATTTCAAGTGGAGAATACTGAAATTACTCGGCTCTTGGCAGTGGCACCAAGT
ACACATGCCAAGCATCTAAGTCCCAACCAACAACAATTAAAAATACTCAATTGTAAGTAACACA
ACTCAGAAATCAGAACTTACATCAACATCCATCTGGTCTGTGTTATCATTTGATGGCTCCACAA
CGCTCTTCCCTGATTTAATTAAAAAATTAAGTCTGGTTATAAAGAAAAACACACACACACACAC
AGAGAGAGAGAGAAGACTTAGGATGTAGCTGGTGAAATAGTCGAGGTGCATAAACACACACACA
CACACAACAGCAGCTGCACAAAACAAACAGATACCTTTGGAGATCTGATTAAACTTTTGGATTG
CATCAATTCCATTGCTAATAAGAATTTGATTGAAAAGATCAACCTCTAACTTTGGAGTTGCAAT
GGACTTCTTCTTCTGTTTTTGTATCTCTGGAGCATAACTACTATCTGCTAATTTTCGTTCATTC
TTAATTTTTCGTGTCATCTTTCTTTGGAGCGATTACTGGTTTCTCAATTGCTAAGTATTGATTG
AAGAGACTCAAAAAAAAATTATCTGCAAAAGAAAGGGCTTATTGAAGGAGAGTAGGGATTTCTT
GCTAATCAGGTACTATCATCGAGCTGCAACTGCTTGAAAAAAATCAATTGAAACATCAGGTGGG
ATAAAAGGAAAGAGTGTACCTGCGCCGCTTGATGATCGGATGCACAATCTTGTTTTCTAGGATT
TCTTTTTCTATTGAAAAAAAGCTTTAGTTTTGTTCATTCATTATCACAATTTATGCAACACAAT
TATTAATTAAAGGGTCTAACTAACGCAAATATTAGATAGTTAGGCGTCGTTTGGCATGAAGTAA
AAGGTATAATAATCCCAGGGATAAAATGTAGGATTATTTTATCCGGTGTTTGGTTGGAGGTATT
AGGCAGTCTTGGAATTATTTATTCCACCATTTAAACCTTAGTGATGGGATAAGTTATCCCATAT
ACATGGTGGAATAATTAATCCTATAATAACTTGTTCCCAACCAAACGACCCCTTAGAGTATTAT
AAATTGGAAAACTTCTTTTTATTGTAAAAAAGAAGAGCATTGCAATGCGAATGATTTTACGATG
CGAATAATAAATTATCATGACACAAAGGAGAAATTTTGCAGGGACAACTGTTTGATAAATGACC
TTTTTATTATATCTTGCAATTTACGATTCTTTGCCATATCACAGTAAGATTCCTTTTGAGCAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.128551001
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2018