Detail information of BGIOSGA016301_circ_g.1


General Information
CircRNA Name BGIOSGA016301_circ_g.1
ID in PlantcircBase osi_circ_005414
Alias 4:17070519|17071819
Organism Oryza sativa ssp. indica
Position chr4: 17070519-17071819  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016301
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016301_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA016301-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAAGAGGATGCAGCATTGTTTATATTCCGATTGAAATCATTGAAGCAAGGTCAATTCCGTAGT
ATTTTAACACAGGCTGCTCGCCACCATTCTGCTCAGgaaatggaggaaatgaggaattgttatg
acagcttgctttcagctgcagctgcaacaatgaacagtgtatatggtaggttatgatcttttca
tatgtgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAATGGAGGAAATGAGGAATTGTTATGACAGCTTGCTTTCAGCTGCAGCTGCAACAATGAACA
GTGTATATGGTAGGTTATGATCTTTTCATATGTGAAGTTACATTTCTAATAAACAACATTGCCT
CCATTGGTATAACGGAATAGCTTATTCATGTAACAGTTTCATAATTAGTTGTAATCAAACACAT
GCAGAGTTTGCAGAAGCTATGGAGGAAATGGGAACTTGCTTACTTGAGAAAACTGCATTGAATT
ATGATGATGATGACAGTGGTGAGTTGTCTGGGTCTATACGCTATAAGATGTGGAAGCTTGTAAG
GGAGCAATTATTATTAGCGGTGTTTGTAGGACAGTACATTTCTAGACATAGAGTTGGTCTGGCA
TGTTTCCACACTTCTGTTTTTCCTTCGAAATTGCCAGGCTGTTCATTAAGATCATCAAATGAAG
AATTCCTGTGTTATTTTTTCCTTAGTTATAGAAGTATTTGGTCTTCTTTGCTGTATTTATTTTG
TTTTGCACTTTTACCTGCAGGCAGAGTTCTGATGATGCTAGGAAAGGCCCAGTTCGAACTGCAG
AAGTTTGTTGATAACTATGTAAATTTCTTTGCTACTCTTGTAAAACTGCACTGAAATTTAGTCT
CACACCTGTTTAAGAGAATCACAATTTTTTCCAAACTTTGTTAAGTCTGACTATATTTTGTTAA
TGTTTTCAGCGTACAAATATCATAAATACCATCACAAACCCATCAGAGTCACTTCTCAAAGAGC
TACAAGTTGTAGAGGTTCGATCTATTTCAGTTTTCCCCTGATCCTTCCTAAGTATTGTACGTTA
TGGATGCTCATATTCAAGCAGGATTATTGTTAATTTGGTGCCATATATTACTCATATTTTTTTC
TGAATAAAAATGAGTTACATTCCTTTTGCTTAATTTGTGATTTTTATAATATGATGTCGTTTAC
ATTGCATTCTTACTGACGCAGGAAATGAAGGAACTCTGTGATCATAAAAGGTACACAATCTACT
TGAATTTAATCACATGTATATTGCTTCTGTGGTCTCTTCTAAATGCTACCATATTATTTTGGGC
TTCAGACAGGAATATGAAGCCATGCGAGCAGCCTATAGAGAGAAAGGACGGTCAAGGCATTCCA
AAACCGAAACATTATCCTCGGAACAACTGCAAGCTTATTTTCTTGACTATCAAGAGGATGCAGC
ATTGTTTATATTCCGATTGAAATCATTGAAGCAAGGTCAATTCCGTAGTATTTTAACACAGGCT
GCTCGCCACCATTCTGCTCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 17070523-17071816(+)
Potential amino acid sequence MEEMRNCYDSLLSAAAATMNSVYEFAEAMEEMGTCLLEKTALNYDDDDSGRVLMMLGKAQFELQ
KFVDNYRTNIINTITNPSESLLKELQVVEEMKELCDHKRQEYEAMRAAYREKGRSRHSKTETLS
SEQLQAYFLDYQEDAALFIFRLKSLKQGQFRSILTQAARHHSAQEMEEMRNCYDSLLSAAAATM
NSVYEFAEAMEEMGTCLLEKTALNYDDDDSGRVLMMLGKAQFELQKFVDNYRTNIINTITNPSE
SLLKELQVVEEMKELCDHKRQEYEAMRAAYREKGRSRHSKTETLSSEQLQAYFLDYQEDAALFI
FRLKSLKQGQFRSILTQAARHHSAQEMEEMRNCYDSLLSAAAATMNSVYEFAEAMEEMGTCLLE
KTALNYDDDDSGRVLMMLGKAQFELQKFVDNYRTNIINTITNPSESLLKELQVVEEMKELCDHK
RQEYEAMRAAYREKGRSRHSKTETLSSEQLQAYFLDYQEDAALFIFRLKSLKQGQFRSILTQAA
RHHSAQEMEEMRNCYDSLLSAAAATMNSVYEFAEAMEEMGTCLLEKTALNYDDDDSGRVLMMLG
KAQFELQKFVDNYRTNIINTITNPSESLLKELQVVEEMKELCDHKRQEYEAMRAAYREKGRSRH
SKTETLSSEQLQAYFLDYQEDAALFIFRLKSLKQGQFRSILTQAARHHSAQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021