Detail information of BGIOSGA016679_circ_ag.1


General Information
CircRNA Name BGIOSGA016679_circ_ag.1
ID in PlantcircBase osi_circ_014514
Alias Chr04:25282810_25286372(MH63RS2), Chr04:25282810_25286372(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23212892-23216457  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGATGAGAAGGAAAACAGAGATGGTGCGGAGCACCTGCTGCGTGGTGCTGCTCTTGCTCCTCA
GCGTTGCTGCTCGATCGGCTTCGGCCATCATGGACGggcctgctgccgaatggcaacttcgagg
aggcgccggacaagtcgcagatgaacggcacgagggtgacgggtcgctacgcgatacctcagtg
ggagatct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCCTGCTGCCGAATGGCAACTTCGAGGAGGCGCCGGACAAGTCGCAGATGAACGGCACGAGGG
TGACGGGTCGCTACGCGATACCTCAGTGGGAGATCTCCGGGTTCGTGGAGTACATCGGGTCGGG
CCAGAAGCAGGGAGACATGCTCCTGCCGGTGCCGGAGGGCGCGTACGCCGTGCGGCTGGGCAAC
GAGGCCTCCATCCAGCAGCGGCTTACCCTGACGCGGGGAATGCACTACTCCATCACATTCAGCG
CGGCGCGCACCTGCGCCCAGTCCGAGCTCCTCAACATCACGATCACCCCCGAGTCCGGCGAGAT
CCCCATCCAGACGGTGTACACCAGCAGCGGCTGGGACTCCTACTCCTGGGCCTTCAAGGCCAAG
CACAGCGTCGTGTTGTTCATCGTCCACAACCCCGGTGTCTCTGATGACGAAGCTTGCGGCCCCC
TCATCGACTCGTTCGCCATTAAGACCCTGAACCCTCCTCAAAGAACGAAAGGTAATTAATTAAT
TGAGCCGGGTGCTAACCTCTCCACAAAGCTGCTATCAGTGTGCATCTCTACAAAATTGAATACA
AGGATGTGCTCACAGTCATGAAACAATCGAACAAAATGAACCAGGTAACATGCTGAAGAATGGG
GGCTTCGAGGAGGGCCCGTACATCTTCCCCAACACGTCCTGGGGCGTGCTTGTGCCGCCCATGG
ACGAGGACGACTACTCGCCGCTGTCCCCGTGGACGATCCTGTCGACCACCAAGTCCGTCAAGTA
CATCGACGCGGCGCACTACGCTGTGCCGGGCGGCGCCCGCGCGGTTGAGCTGGTGTCCGGCATG
GAGACGGCGATGCTGCAGGAGGTGAGCACCGTGCCCGGGCGGTCGTACAGGCTGGAGTTCTCCG
TCGGGGACGCCGGCGACGGGTGCTCCGGGTCCCTGACCGTGCAGGCGTACGCGTCGCGCGGGAG
CGTGAAGGTGACGTACCAGTCGCAGGGCACGGGCGGCTACAAGCGCGGGCTGCTCGAGTTCACG
GCCACGGAGAAACGGACGCGGGTAGTGTTCGTCAGCATGGCCTACACCACGAAGTCCGACGGCA
CGCTGTGTGGTCCCGTCATCGACGACGCGTCGCTCGTCAGTGTCCGCAGCCACCGCCGGTTCCT
TCTGTAATATTATTACTATCGTCAACGTCACTAGAATTTAAAATGACTTAAAGTTGTCCCATAT
GAAGGAATATCTCAATTCCTTTTATATGATTCTTATGCCAAAAGGGTGAGATGATTTTTTTTCC
GAGGAAAAAAATGTGAGATATTATGGATGCAATTGATAGAAAACCGGGGGTAATTACATAACCG
TACATGCTTATTCGAATATTGAATATGACCAGGCCCATGTTTGGATGCAAAGAAACGAAGTCAG
TAGAAAAGATGATTGAATTTGACTTGTCTCAACTATCAAGTCACAAGTGTAATGTACTCATTTA
TGTTAGATTATTGGAATCATATTTTAAGGTTGAGATCAAGCTCTTCATTAGTAGTCCCAGAGGT
AAGCTTCACGTCTACTACATCTATTCTAAAATAAACAAACATACTATATACAATACTCTCTTCG
TCTCATAATATAAAAAAGTAAAATAAACAAACATACTATATACAATACTCTCTCCATCTCATAA
TATAAAAAAGTTTTAGAGTTATATACGGTTATTAAAAAAATAGGTACAAATAAATGGTGGAGGG
TTATAATTGGATGAGTAGTAGAGGTAGGTGTAAAAAGTGAATGGTGGAGGGTTTTGATTGGTTG
GGAAGAGAATGTTGATTGAGAAGTTATATTTTGGGATAAATCATGAGGACTAAAAATTGTTATA
TTTTTGGGACGGAGAGGGTATTATGAATTTAGACAAACTCTTGTCTATTTGTAAACTAGAATAC
ATCACATCTTGTGCTATATTTGTATATTTGTCTATTTTAGAACGAAGGGAGTAGTCAAGATCAT
TTTAAATTAGACTATGGAATAAACAATTATTCCTTCTATTAAAAAAACATTTCTAGCCCTCAAA
CTTTATTAAACAAAATTTCATTTCTACCTTCCTACCTACTTATTGGTTCACAAAATCAAGAAGT
TTATTCTTTGCCTACAACTTATCTATTATAGTACTAATAACTACATTTTTAATTAACAATGGAC
ACTTTGGTTGTTTACACTAACCATTAGTTTATAAACCGATGATTAGAAATAGAGTTTTTCTGGG
TCGGAAATAATAGACATGTTGCAAGGTCCTTTAAAAAGTCAAATATATTTGTGGCTAGTAAACT
TTTTGTCTGTGATATCTTGGTGCATAAAAATCTTTAAAAATGTAAATCCACACCGTTTATGTTT
GCTTAACGTACCATCACTATTCCAGAAATACAACGTATCATGTTAGAGTATAAAATAGGAAAGT
GTTGTTGAACATCCTATATTTTTGCAAATACTGGACGGTGTTGCACTATATTATCACAGAATGT
TTCACATATTGCACACCACGATGAAAAATGTTTCAACGAAAATGTTTCATATGTTTCATTAATT
GAGGAAAATATTACATCTTTTTAACTGAAATTCTTGCTTTCCGTCTTGTTGCTTACAGGTCCTG
CAGTATCGTCATGTGTGATTAGTAATAGCAACACAAGCCATTAGCATCAAATGAACGCATTATC
GTGTCAAAAAAAGATCAACGCGTTATAGTGTGGATCTAACCAGATTTGGGCCACGACATTTGTG
TACTACCCAGTGTGATAGTGCGTCTTAATCGGTACGGAAGAAAGTAAAATTTTTGGGCTAGTGA
TTTCGGCCTCATGGGCCAGATCGGCAGACCAAACCACGTGTACACCCAACACGAGGCCCGTTTT
CTCAGCCCTAGTCATCCCCACTTGCCCGGATCAACGACGGGAGTCGCCGCATCGGGCGGCGTGC
ACCAGTAACTACAGTTTGTCACCTCCTCGCAGGTCGCCGCCACAGATGCAGGGAAGGGCGGAGT
TTTGTAATGGCAGGTGGCCATGCGAACGAGAAAGAAGGGAAAGGAATGGCCATGTGACATTGTG
ACCCCAAGCCAAACACCGCAACACGCAGTCGCGCCTTCCCCAGTCACCAACACGCCGAGGAACT
CCATTTCCACCGCATCTCAGGACGGAGAGATGCCCTGCCAACCGCCTCGATCGTGGCGGCCCGT
GCATCCGGAGCGAGTTTTGCTCGGCTTGCCGTAGGAAGCAAGGTGCCCAACTTGCCAGCACTAG
CTCCATCCAGGTTCTTCCGTCAAAAAAAGCTCCATCCAGGTTACATCCTCTCTGAGCACGCATC
TCCTCTATAACTACAAGTGCCAACACAGCACTGTGATGCAGCACTACTTGTTTCCATTACCAAA
ATTCTGCGGCAACTTGTTTACAGCTGAGTATCAGATATTCAGAGTATAGGGAGTACTTCTTGTC
CCGAAGGCAGCTGATGAGAAGGAAAACAGAGATGGTGCGGAGCACCTGCTGCGTGGTGCTGCTC
TTGCTCCTCAGCGTTGCTGCTCGATCGGCTTCGGCCATCATGGACG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021