Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0550400_circ_g.6 |
ID in PlantcircBase | osa_circ_024777 |
Alias | NA |
Organism | Oryza sativa |
Position | chr4: 27553586-27555429 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os04g0550400 |
Parent gene annotation |
E3 ligases of H2Bub1, Transcriptional regulation of anther devel opment (Os04t0550400-01) |
Parent gene strand | - |
Alternative splicing | Os04g0550400_circ_g.4 Os04g0550400_circ_g.5 Os04g0550400_circ_g.7 Os04g0550400_circ_g.8 Os04g0550400_circ_g.9 Os04g0550400_circ_g.10 Os04g0550400_circ_g.11 Os04g0550400_circ_g.12 Os04g0550400_circ_g.13 Os04g0550400_circ_g.14 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os04t0550400-01:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.110724408 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
27555405-27553785(+) 27555422-27553588(-) 27553658-27555422(-) |
Potential amino acid sequence |
MLLKSIKIFLVLSSSLSIICCSNCWFCACMSSYACPIHSTSTL*(+) MDFKSIRSSKAFQLVNDRLQKSQAELDHYQTLLEKLQVDKDKFVWQERQFNLKVDLAEIPERVS TYCESSIADLKKDIQKLCDEKNMLILKLEEASREPGRNQVITKFKALVSSIPREMGAMQSEMTK HKEASLELNSLRAEVHSLSRILSRKERDNEEASCRSARAGSDITQLQSVISDLKQTNKELKLFA DMYKRESTDSREIMESRDREFLEWAHVHALKSSLDESKLEQRVKAANEAEAITQQRLATAEAEI AESGQKLGTSRKDLVSLSHMLKSKQEECEAYRVEVECIGQAYEDIQAQNQQLLQQIIERDDDNT KNILMDFKSIRSSKAFQLVNDRLQKSQAELDHYQTLLEKLQVDKDKFVWQERQFNLKVDLAEIP ERVSTYCESSIADLKKDIQKLCDEKNMLILKLEEASREPGRNQVITKFKALVSSIPREMGAMQS EMTKHKEASLELNSLRAEVHSLSRILSRKERDNEEASCRSARAGSDITQLQSVISDLKQTNKEL KLFADMYKRESTDSREIMESRDREFLEWAHVHALKSSLDESKLEQRVKAANEAEAITQQRLATA EAEIAESGQKLGTSRKDLVSLSHMLKSKQEECEAYRVEVECIGQAYEDIQAQNQQLLQQIIERD DDNTKNILMDFKSIRSSKAFQLVNDRLQKSQAELDHYQTLLEKLQVDKDKFVWQERQFNLKVDL AEIPERVSTYCESSIADLKKDIQKLCDEKNMLILKLEEASREPGRNQVITKFKALVSSIPREMG AMQSEMTKHKEASLELNSLRAEVHSLSRILSRKERDNEEASCRSARAGSDITQLQSVISDLKQT NKELKLFADMYKRESTDSREIMESRDREFLEWAHVHALKSSLDESKLEQRVKAANEAEAITQQR LATAEAEIAESGQKLGTSRKDLVSLSHMLKSKQEECEAYRVEVECIGQAYEDIQAQNQQLLQQI IERDDDNTKNILMDFKSIRSSKAFQLVNDRLQKSQAELDHYQTLLEKLQVDKDKFVWQERQFNL KVDLAEIPERVSTYCESSIADLKKDIQKLCDEKNMLILKLEEASREPGRNQVITKFKALVSSIP REMGAMQSEMTKHKEASLELNSLRAEVHSLSRILSRKERDNEEASCRSARAGSDITQLQSVISD LKQTNKELKLFADMYKRESTDSREIMESRDREFLEWAHVHALKSSLDESKLEQRVKAANEAEAI TQQRLATAEAEIAESGQKLGTSRKDLVSLSHMLKSKQEECEAYRVEVECIGQAYEDIQAQNQQL LQQIIERDDDNTK(-) MRTYRHKTNNCYSRLLKEMMIIPRIS*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |