Detail information of Os04g0550400_circ_g.6


General Information
CircRNA Name Os04g0550400_circ_g.6
ID in PlantcircBase osa_circ_024777
Alias NA
Organism Oryza sativa
Position chr4: 27553586-27555429  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0550400
Parent gene annotation E3 ligases of H2Bub1, Transcriptional regulation of anther devel
opment (Os04t0550400-01)
Parent gene strand -
Alternative splicing Os04g0550400_circ_g.4 Os04g0550400_circ_g.5 Os04g0550400_circ_g.7 Os04g0550400_circ_g.8 Os04g0550400_circ_g.9 Os04g0550400_circ_g.10 Os04g0550400_circ_g.11 Os04g0550400_circ_g.12 Os04g0550400_circ_g.13 Os04g0550400_circ_g.14
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0550400-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGGTAGTGATCCAATTCTGCTTGTGACTTCTGAAGTCGATCATTAACAAGCTGAAAAGCTTT
TGAAGAACGAATGCTCTTGAAATCCATCAAGATATTcttggtattatcatcatctctttcaata
atctgctgtagcaattgttggttttgtgcctgtatgtcctcatatgcttgcccgatacactgga
ataggtta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 972
Transcript exons: 27553586-27553672,27553770-27553842,27553960-27554154,27
554414-27554490,27554608-27554679,27554771-27554931,2755
5020-27555206,27555310-27555429
CTTGGTATTATCATCATCTCTTTCAATAATCTGCTGTAGCAATTGTTGGTTTTGTGCCTGTATG
TCCTCATATGCTTGCCCGATACACTCGACCTCCACTCTGTAAGCTTCACATTCTTCCTGTTTAG
ACTTCAGCATATGGGATAAACTGACTAGATCCTTTCTAGAAGTCCCAAGCTTCTGCCCTGATTC
AGCAATCTCAGCTTCTGCAGTTGCTAGCCTCTGCTGTGTGATTGCTTCAGCTTCATTGGCAGCC
TTAACACGCTGCTCTAGCTTACTTTCATCAAGAGATGATTTCAGGGCATGAACATGAGCCCATT
CAAGGAATTCCCTATCTCTGGATTCCATTATTTCCCTGGAATCAGTGGATTCACGCTTATACAT
ATCCGCGAACAACTTAAGCTCCTTATTAGTTTGCTTCAGATCAGAAATCACTGATTGAAGTTGT
GTTATATCAGATCCCGCACGGGCAGATCTGCATGATGCTTCTTCATTATCACGTTCCTTTCTGG
ACAGAATGCGAGAAAGTGAATGGACTTCTGCTCGCAAAGAATTCAACTCCAAGGAAGCCTCCTT
GTGTTTGGTCATTTCACTCTGCATCGCGCCCATTTCCCTTGGTATCGATGACACTAAAGCTTTA
AATTTTGTAATAACTTGATTCCGACCAGGTTCTCTTGAAGCCTCTTCAAGTTTGAGAATAAGCA
TGTTTTTTTCATCACATAGTTTCTGAATATCCTTCTTGAGATCAGCAATGCTAGACTCACAATA
TGTAGAAACCCTCTCAGGAATCTCAGCCAGATCAACTTTCAAATTAAATTGCCTTTCTTGCCAC
ACAAACTTATCCTTATCAACCTGTAATTTCTCTAATAATGTCTGGTAGTGATCCAATTCTGCTT
GTGACTTCTGAAGTCGATCATTAACAAGCTGAAAAGCTTTTGAAGAACGAATGCTCTTGAAATC
CATCAAGATATT

Genomic sequence CTTGGTATTATCATCATCTCTTTCAATAATCTGCTGTAGCAATTGTTGGTTTTGTGCCTGTATG
TCCTCATATGCTTGCCCGATACACTGGAATAGGTTAGTAAAAGTTTCAAACTCAGGATGACAAT
GTTTAATATATGTTTAAAGCCATACTTGAACTGCATGCATAAAAGATGGCACACACCTCGACCT
CCACTCTGTAAGCTTCACATTCTTCCTGTTTAGACTTCAGCATATGGGATAAACTGACTAGATC
CCTGAACACAGTGAACATTCAGCAGTAAGCATCAATTTCCTTTAGTAACCCTAAAAGAGAAGTG
ACCCCTACTTCAACAGTTCTAAGAGAAACAATGTTCAGAAGCATAATTCTGTACTTTCTAGAAG
TCCCAAGCTTCTGCCCTGATTCAGCAATCTCAGCTTCTGCAGTTGCTAGCCTCTGCTGTGTGAT
TGCTTCAGCTTCATTGGCAGCCTTAACACGCTGCTCTAGCTTACTTTCATCAAGAGATGATTTC
AGGGCATGAACATGAGCCCATTCAAGGAATTCCCTATCTCTGGATTCCATTATTTCCCTGCCAC
ACACACAAAAAAAGGTTATTTCCATCACAAAATAAATAAACTTAAGTTACTGGTGATGAGTGAT
GAAATGTCATGGCCATAGTAGAGTGACCGTGCAATGAATTAAATACATGATAGGTAAACAATTA
AACACGGCATTACACTGCACTCTGTCCTAAGAAGTGAGATGCATCTATCTCTACAAAATATCAC
AAGTCTTAGCCAAAAAAAAAAGTTGTGTTGAGAATTATATATGATATAAAATTGAAATACCTGG
AATCAGTGGATTCACGCTTATACATATCCGCGAACAACTTAAGCTCCTTATTAGTTTGCTTCAG
ATCAGAAATCTACAGGGTTTTGGTTTCAATATGTCAAATTATCATGGGAGGACAAATTCCTGCA
ATAGCTAAACAAAACACCTTAATGAAGAGAAAAAATAAGCTGAGTCTAAACAAACAAGATACCA
CTGATTGAAGTTGTGTTATATCAGATCCCGCACGGGCAGATCTGCATGATGCTTCTTCATTATC
ACGTTCCTATAAAACAAAATAAACAGCCTGACACATTGGCGAATCAATGCCATAACACTTGCGA
GTCATATGTGCAAGCCAATAACAAGCAATTTACCTTTCTGGACAGAATGCGAGAAAGTGAATGG
ACTTCTGCTCGCAAAGAATTCAACTCCAAGGAAGCCTCCTTGTGTTTGGTCATTTCACTCTGCA
TCGCGCCCATTTCCCTTGGTATCGATGACACTAAAGCTTTAAATTTTGTAATAACTTGATTCCG
ACCTGACAAGTGCAAACAATTCCTTATTACCTGCTTTAGCAAGACAAGTTTGAAAGTTACTCTT
GGTAAAGTGAATAGTAACTACCGCACCAGGTTCTCTTGAAGCCTCTTCAAGTTTGAGAATAAGC
ATGTTTTTTTCATCACATAGTTTCTGAATATCCTTCTTGAGATCAGCAATGCTAGACTCACAAT
ATGTAGAAACCCTCTCAGGAATCTCAGCCAGATCAACTTTCAAATTAAATTGCCTTTCTTGCCA
CACAAACTTATCCTTATCAACCTGAAACATATCAAATAGGAATTCAACAAAAGATCAAATGCTC
TAGCGAGACATTTTTGCTATACAACTCTGGAATCCAACAAATCCACTGACCAGTAACCACCTGT
AATTTCTCTAATAATGTCTGGTAGTGATCCAATTCTGCTTGTGACTTCTGAAGTCGATCATTAA
CAAGCTGAAAAGCTTTTGAAGAACGAATGCTCTTGAAATCCATCAAGATATT
Conservation Information
Conserved circRNAs NA
PMCS 0.110724408
Functional Information
Coding potential Y
Potential coding position 27555405-27553785(+)
27555422-27553588(-)
27553658-27555422(-)
Potential amino acid sequence MLLKSIKIFLVLSSSLSIICCSNCWFCACMSSYACPIHSTSTL*(+)
MDFKSIRSSKAFQLVNDRLQKSQAELDHYQTLLEKLQVDKDKFVWQERQFNLKVDLAEIPERVS
TYCESSIADLKKDIQKLCDEKNMLILKLEEASREPGRNQVITKFKALVSSIPREMGAMQSEMTK
HKEASLELNSLRAEVHSLSRILSRKERDNEEASCRSARAGSDITQLQSVISDLKQTNKELKLFA
DMYKRESTDSREIMESRDREFLEWAHVHALKSSLDESKLEQRVKAANEAEAITQQRLATAEAEI
AESGQKLGTSRKDLVSLSHMLKSKQEECEAYRVEVECIGQAYEDIQAQNQQLLQQIIERDDDNT
KNILMDFKSIRSSKAFQLVNDRLQKSQAELDHYQTLLEKLQVDKDKFVWQERQFNLKVDLAEIP
ERVSTYCESSIADLKKDIQKLCDEKNMLILKLEEASREPGRNQVITKFKALVSSIPREMGAMQS
EMTKHKEASLELNSLRAEVHSLSRILSRKERDNEEASCRSARAGSDITQLQSVISDLKQTNKEL
KLFADMYKRESTDSREIMESRDREFLEWAHVHALKSSLDESKLEQRVKAANEAEAITQQRLATA
EAEIAESGQKLGTSRKDLVSLSHMLKSKQEECEAYRVEVECIGQAYEDIQAQNQQLLQQIIERD
DDNTKNILMDFKSIRSSKAFQLVNDRLQKSQAELDHYQTLLEKLQVDKDKFVWQERQFNLKVDL
AEIPERVSTYCESSIADLKKDIQKLCDEKNMLILKLEEASREPGRNQVITKFKALVSSIPREMG
AMQSEMTKHKEASLELNSLRAEVHSLSRILSRKERDNEEASCRSARAGSDITQLQSVISDLKQT
NKELKLFADMYKRESTDSREIMESRDREFLEWAHVHALKSSLDESKLEQRVKAANEAEAITQQR
LATAEAEIAESGQKLGTSRKDLVSLSHMLKSKQEECEAYRVEVECIGQAYEDIQAQNQQLLQQI
IERDDDNTKNILMDFKSIRSSKAFQLVNDRLQKSQAELDHYQTLLEKLQVDKDKFVWQERQFNL
KVDLAEIPERVSTYCESSIADLKKDIQKLCDEKNMLILKLEEASREPGRNQVITKFKALVSSIP
REMGAMQSEMTKHKEASLELNSLRAEVHSLSRILSRKERDNEEASCRSARAGSDITQLQSVISD
LKQTNKELKLFADMYKRESTDSREIMESRDREFLEWAHVHALKSSLDESKLEQRVKAANEAEAI
TQQRLATAEAEIAESGQKLGTSRKDLVSLSHMLKSKQEECEAYRVEVECIGQAYEDIQAQNQQL
LQQIIERDDDNTK(-)
MRTYRHKTNNCYSRLLKEMMIIPRIS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017